Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734165.1_202014-07-28] 8,275 sequences; 36,036,965 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq997 109 4e-19 >seq997 Length=26590 Score = 109 bits (120), Expect = 4e-19 Identities = 267/400 (67%), Gaps = 10/400 (3%) Strand=Plus/Plus Query 30062 ACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30118 ||||||||||| | ||||| |||||||| || || |||| || | ||| ||| Sbjct 6513 ACGTAAAACTGCGCAAACATG---TGGCACGGCGGCAGGACCATAAGCTTGAGGTCCTTG 6569 Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30178 |||||||| || | | | ||||| | ||| | ||||| | | || || |||| Sbjct 6570 GGGTTCCAAGCACTAAGAACCATGCGGCGGTCGTACGGGTTCGTGCGGAGCTTGTGCACG 6629 Query 30179 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 30238 | | ||||| || || ||| |||| ||||||||| ||| ||||| || Sbjct 6630 ACCTCGGCGAGCTGGTCGACGCCCTGGCCCGTGTAGTCTGCGTGGCAGTCGGTGTATTCG 6689 Query 30239 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30298 || || || || | ||| ||||| ||||| || || |||||||| ||| | || | |||| Sbjct 6690 GCGCCAAAGTGGCGCCATTGGAAGCCGTAGACGGGGCCCAGGTCGCCCACCTCGCGGTGC 6749 Query 30299 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC- 30357 | || ||| | ||||| || || | | |||||| ||||||||||||| ||||| Sbjct 6750 TGCAATCCCAGCCCGTCCAGGAACTCACGGCTGCCGTTGCCGTCCCAGATCTTGACCCCG 6809 Query 30358 -CTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCA 30416 | || | || | ||| | | || | || ||||||||||||||||| | Sbjct 6810 GCGTCGCTCAG-GGGCTTCGCCG-ACGTCGCGCCCGACACGAACCACAGCAGCTCGAGGA 6867 Query 30417 CGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 |||||| | | ||||| | ||| ||||| || || || Sbjct 6868 TCACGGCCCGCGAGAAGACGCGCTTCGTCGTCAGCAGAGG 6907 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 29821 CCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGG 29880 |||||| ||| || ||| || || || ||||| | ||| ||||| ||| || | Sbjct 6191 CCTGTTGATCTCGAGCTCGGGGAACGGCCTCGGCTCGCGCTCCAGCTGCGTCCGGAGTGC 6250 Query 29881 TTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTC 29940 || |||| || |||||||||||| || |||| | ||| | | || || | Sbjct 6251 GTCGACGTGGTCGGCGTAGACGTGAGCATCGCCCATGACGTGCGTCAGCGACCCGGGCAC 6310 Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000 ||| || ||| | | || ||||||| ||| || || | ||||||||| ||||| ||||| Sbjct 6311 TAGACCCGTGGCACGCGCAATCATGTGCGTCAGCAGTGCGTAGCTGGCAATGTTGAAGGG 6370 Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 || || || |||||||| | |||| |||||||||||| || Sbjct 6371 CACGCCTAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCA 6412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406269422961300