Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734215.1_202014-07-28] 5,947 sequences; 37,593,290 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3123 140 1e-27 seq5665 120 9e-22 >seq3123 Length=38259 Score = 140 bits (154), Expect = 1e-27 Identities = 431/664 (65%), Gaps = 11/664 (2%) Strand=Plus/Minus Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || ||||| || |||||| ||||||| || || | ||| || || || || || Sbjct 27981 ATTATCGCCAATGACCAGGGTAACCGAACAACCCCGTCCTTCGTGGCGTTCACGGATACC 27922 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| |||| || ||| | || || || || | ||| || || | || || || Sbjct 27921 GAGCGTCTGATCGGAGATGCGGCCAAGAACCAGGTCGCTATGAACCCCCACAACACCGTC 27862 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAATCTGA 349440 || || || ||| | | |||||| | | || || ||| | || || | || Sbjct 27861 TTCGACGCGAAGAGGTTGATTGGTCGCAAGTTCTCCGACGCTGAGGTC----CAGGCCGA 27806 Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGT 349500 | || || || || || | || || | | | | | || || || | |||||||| Sbjct 27805 CATGAAGCACTTCCCCTTCAAGGTCGT-CGAGAGGTC--TGGCAAGCCTGTCATTGAGGT 27749 Query 349501 TGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGT 349560 || | || || || ||| || || || || || || ||||| ||||| || Sbjct 27748 CGAGTTCAAGGGAGAGTCAAAGCAGTTCACTCCTGAGGAGATCTCATCCATGGTCTTGAC 27689 Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTAC 349620 || ||| || | |||||| | || | |||| || || | | ||||| | || Sbjct 27688 CAAGATGCGTGAGACTGCTGAGTCTTACCTTGGTGGCACCGTCAACAACGCTGTCGTCAC 27629 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || || ||||| || || || | |||||| || || || ||||| || |||||| Sbjct 27628 CGTCCCCGCCTACTTCAACGACTCGCAGCGTCAGGCTACCAAGGATGCCGGTCTCATTGC 27569 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || | || || || | || || || || || ||||| || || || || || || || Sbjct 27568 TGGTCTGAACGTCCTCCGTATCATCAACGAGCCTACTGCCGCCGCCATCGCCTACGGTCT 27509 Query 349741 TGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800 ||| || | | || || || | |||||||| ||| | |||||||||||||| Sbjct 27508 TGACAAGAAGGTCGAGGGTGAGCGCAACGTGCTTATTTTCGATCTTGGTGGTGGTACTTT 27449 Query 349801 TGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860 ||||| || || || || |||| ||||| || || || || || | || |||||||| Sbjct 27448 CGATGTGTCGCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACCGCTGGTGA 27389 Query 349861 TACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATT 349920 || || | ||||| || || ||||| || ||| | ||| | || || | || || || Sbjct 27388 CACCCACTTGGGTGGTGAGGACTTTGACAACCGTTTGGTTACTCACTTCGCCAACGAGTT 27329 Query 349921 TAAG 349924 ||| Sbjct 27328 CAAG 27325 >seq5665 Length=29674 Score = 120 bits (132), Expect = 9e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || | ||| || || ||| ||||| || || || || Sbjct 25086 CATGCCACCACGGAGACGAAGGACCAAATGGAGGGTGCTCTCCTTTTGGATGTTGTAGTC 25145 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || |||||||| || || || ||||| || || || Sbjct 25146 GGAAAGGGTCCGACCGTCCTCAAGCTGCTTTCCAGCGAAAATAAGGCGTTGTTGGTCCGG 25205 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | |||||||| || || | ||| || | || Sbjct 25206 AGGAATACCCTCCTTGTCCTGGATCTTCGACTTTACATTGTCGATGGTATCGGAGGACTC 25265 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | |||| ||||| || || || ||||| || ||||||||||| Sbjct 25266 GACCTCCAAGGTAATCGTCTTGCCAGTGAGGGTTTTGACGAAAATCTGCAT 25316 Score = 113 bits (124), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || |||||||| || ||||| || || | Sbjct 24854 TTTGCATACCACCACGCAGACGCAGGACCAAGTGCAGAGTAGATTCCTTTTGGATGTTGT 24913 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || | || |||||||| ||||| || || || || | Sbjct 24914 AGTCGGACAGCGTGCGTCCATCCTCCAACTGCTTTCCAGCGAAGATCAGTCGCTGTTGGT 24973 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || || || || || | ||| ||||| ||||||| || || | Sbjct 24974 CCGGAGGAATACCCTCCTTGTCTTGGATCTTGGATTTAACATTGTCAATCGTGTCTGAAG 25033 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || | ||||| || || | || || || || |||||||| Sbjct 25034 ACTCGACCTCCAACGTGATGGTCTTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 25088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515138943770441