Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734235.1_202014-07-28] 7,622 sequences; 36,716,275 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3843 104 2e-17 seq1709 91.5 1e-13 >seq3843 Length=29683 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||| || || || || ||| ||| | |||| |||||||| || || ||||| Sbjct 24668 TCCTTCTGAATATTGTAATCAGACAGGGTTCTTCCATCCTCCAGCTGCTTGCCCGCAAAG 24727 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||| ||||| |||| | ||||||||||| |||||| ||||||| Sbjct 24728 ATCAAACGTTGTTGGTCAGGCGGGATACCCTCCTTGTCTTGAATCTTTGATTTGACGTTG 24787 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||||| |||| || |||||||| || || || ||||| || Sbjct 24788 TCGATTGTGTCTGAAGATTCAACTTCGAGTGTGATGGTTTTGCCGGTAAGCGTCTTGACG 24847 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 24848 AAGATTTGCATA 24859 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || ||| || || ||||| ||||| || || | ||| |||| ||| Sbjct 24878 ACCAAGTGCAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAGCGTGCGTCCATCCTCC 24937 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| ||||| || || || ||||| || ||||| | || | ||||||||||| Sbjct 24938 AACTGCTTTCCAGCGAAGATCAGTCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTGG 24997 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||| || | |||| || | ||| || || | || ||||| || Sbjct 24998 ATCTTGGATTTAACATTGTCAATCGTGTCTGAAGACTCGACCTCCAACGTGATGGTCTTG 25057 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||| || ||||||||||| Sbjct 25058 CCCGTCAAAGTCTTGACGAAGATCTGCAT 25086 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/213 (69%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||||| || || || ||||| ||||| |||||| | || | || || Sbjct 25106 ACCAAATGGAGGGTGCTCTCCTTTTGGATGTTGTAGTCGGAAAGGGTCCGACCGTCCTCA 25165 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || || ||||| ||||| | || | ||||||||||| Sbjct 25166 AGCTGCTTTCCAGCGAAAATAAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGG 25225 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| || || || | ||||| || || ||| || || | ||| || || Sbjct 25226 ATCTTCGACTTTAC--AT--TGTCGATGGTATCGGAGGACTCGACCTCCAAGGTAATCGT 25281 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || ||||| || || || || |||||||| Sbjct 25282 CTTGCCAGTGAGGGTTTTGACGAAAATCTGCAT 25314 >seq1709 Length=26057 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/201 (71%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||| ||||| || ||| | | | || || ||||| || ||| Sbjct 13980 GTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCTGCCGTCCTCAAGCTGCTTGCCG 14039 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || | || |||||||| | || | ||||||||||| ||||| ||| Sbjct 14040 GCAAAGATCAAGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 14099 Query 34905 ACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || | ||||| || | | ||| || || | ||| || || || |||||||| Sbjct 14100 AC--AT--TGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAG 14155 Query 34961 AGTCTTCACAAAGATCTGCAT 34981 ||||| || ||||||||||| Sbjct 14156 GGTCTTGACGAAGATCTGCAT 14176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324603443770416