Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734265.1_202014-07-28] 8,518 sequences; 35,871,377 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3988 280 2e-70 seq4958 109 6e-19 seq366 87.8 2e-12 >seq3988 Length=8187 Score = 280 bits (310), Expect = 2e-70 Identities = 531/774 (69%), Gaps = 18/774 (2%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACG 53233 |||| ||| ||| | | ||||||| || || | |||||| |||||| || | Sbjct 5145 GAGAGGCCACAGCACATGATCATGCGTGTTGCTGTAGGTATCTGGGGTGACAACATTGAG 5204 Query 53234 CGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCA 53290 || ||| || || ||| || | ||| ||| || | ||| || |||||| | || Sbjct 5205 CGAGTCATCGAAACCTACAACCTTATGTCTAGCAAA---TTCTTCACACACGCCTCCCCG 5261 Query 53291 ACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATG 53350 || || |||||||| || || || ||||| ||||| ||||||||||| | ||| Sbjct 5262 ACGCTTTTCAACGCCGGCACACCGCAGGCTCAGTTGTCGTCATGCTTCCTGGTTGATATG 5321 Query 53351 AAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAG 53410 ||||| ||| || || || |||||||| || |||||| |||||| ||||||||| Sbjct 5322 AAGGACGACAGCATTGAGGGAATCTACGACACCCTCAAGACTTGTGCCATGATCTCCAAG 5381 Query 53411 TGGTCGGGTGGTATCGGTATCCACTGC--TCGAACGTCCGTGCGAACGGCACACCAATCA 53468 | | || ||||||||| || || | ||| | ||||||| | ||| | ||| Sbjct 5382 ATGGCTGGCGGTATCGGTCTCAACGTCCATCGCA--TCCGTGCCACTGGCTCCTATATCG 5439 Query 53469 AGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGG 53528 || || |||||| | | | || || || || ||||| || || ||||||||||| | Sbjct 5440 CCGGTACCAACGGCACCTCGAACGGCATTGTTCCCATGCTGCGTGTGTTCAACAACACAG 5499 Query 53529 CCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGC 53588 | || |||||| |||||||||| |||||| || | || ||||||||||| |||| Sbjct 5500 CTCGCTACGTCGACCAGGGTGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTTGAGC 5559 Query 53589 CGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGA 53648 |||||||||| || | | ||||| ||||| || | ||| || || | || |||| Sbjct 5560 CGTGGCACGCAGATGTCTTCGAGTTCCTCGACCTAAGGAAGAACCACGGAAAGGAGGAGA 5619 Query 53649 TGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGG 53708 | || |||||||||||| ||||| ||||| || || || |||||| | || | Sbjct 5620 TTCGTGCCCGTGACCTGTTCCTCGCTCTTTGGATCCCTGATCTGTTCATGAAGCGCGTTG 5679 Query 53709 AGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCT 53768 |||| ||| || ||| | |||||||||||||||||||||| |||||| || || Sbjct 5680 AGAAAAACGGCGACTGGACCTTGATGTGCCCGAACGAGTGCCCTGGCCTCGCGGACTGCT 5739 Query 53769 ACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAG---- 53824 ||||||| ||||| | | ||||| || ||| | || || ||||| || | Sbjct 5740 ACGGTGAAGAGTTCGAGGCTCTGTATGAGAAGTATG-AG--CA-GGCCGGTAAGGGTCGC 5795 Query 53825 AAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGA 53884 |||| | ||||||| | | | ||| || | ||||| || ||| ||||| || Sbjct 5796 AAGACGATCAAGGCCCAGAAACTTTGGTATTCCATCCTGGAGGCTCAGACTGAGACTGGT 5855 Query 53885 ACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | |||| |||| ||||||||| |||| |||||||||||||||||| Sbjct 5856 AACCCGTTCATGCTGTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAAC 5909 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 ||||| |||||||| | ||| |||||||||||||| || |||||| |||| | || Sbjct 6741 GCTGACCGTGGTGCCTTCATTGACCAGTCCCAGTCGCTCAACATCCACATGCGCGACCCG 6800 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 | ||| |||| | | ||||||||| || ||| |||||| || |||||||| || Sbjct 6801 ACCATGGGCAAGATCACCTCGATGCATTTCACCGGCTGGAAGCTTGGTCTCAAGACCGGC 6860 Query 55907 ATGTACTATCTGCGGAC 55923 |||||||| |||||||| Sbjct 6861 ATGTACTACCTGCGGAC 6877 >seq4958 Length=5724 Score = 109 bits (120), Expect = 6e-19 Identities = 296/452 (65%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || |||||||| || || || ||||||||||||| ||| || | || ||| ||||||| | Sbjct 3120 CCAGTACCGATACCGTCGGCGCCGTTGACCAGAACCATGGGAATAACAGGCGCGTAAACC 3061 Query 151936 TCCGGCTCCA---CCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCC 151992 | || || | ||| | || ||||| | | || | || ||||| | ||| Sbjct 3060 TTGGGTTCGATGGCCTTT---CCATCATCGACCTGGTGCTGCAGAACGGGCTCATCAAGG 3004 Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 || | || | || || | | ||| | || ||| || || || | ||||||| Sbjct 3003 GGGTTAAACACACGGCGCGCAAAAGGGGAGAGGCGAGTGTGAATATAACGAGCGCTGGCC 2944 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 ||||| | |||||| || || | ||||| | ||||| || || || ||||| | Sbjct 2943 GCATCGCTACCACCTTGAAGTCGAGAACCAAAGTTGCCAGAAGGTTCCAGACAGTTGACG 2884 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCA 152172 || |||| ||| || | || || || | | | || || ||||||| || ||| Sbjct 2883 TTATTGGAGCCTACATAGTTTTGCGCTAGACCTATGATTGTCTGCTGCAGAGAGGCCTCA 2824 Query 152173 CCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCC 152232 |||||||| || || | || ||| | || |||||| |||| | | |||||| | ||| Sbjct 2823 CCGTGGTGGTAAGCGGCCTTCTCTGAGACGTATCCAGCCAGTTCGACGACCTTCTTATCC 2764 Query 152233 GTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCG 152292 | |||||| | || | |||||| | || ||||| ||||| ||||| | || Sbjct 2763 TTGACCAGGTTTTGTTTAAAGCAGGCGAAGATGACCTTCCGCTGTCCAGGTTTTAGTCCA 2704 Query 152293 TCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 || | || | || || |||||| || |||| Sbjct 2703 TCAATCATGGACGGGATTGAACGCATGTTGTC 2672 Score = 86.0 bits (94), Expect = 7e-12 Identities = 90/117 (77%), Gaps = 6/117 (5%) Strand=Plus/Minus Query 119074 ACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCT---G 119130 |||||| | ||||| ||||| || || |||||||| ||||| || |||| || | Sbjct 1063 ACTGAAAATGTTGGTGAGCTTTGCGCCATATCCGTTACGACCTCC---CACGGTCTTGAG 1007 Query 119131 CTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 ||||| ||||| ||||||||| | |||| ||||| || ||||||||||| ||||| Sbjct 1006 CTCCTTGTCGTCGTAGTTGGAACCCGTCAGGAGGTGACCGAAGATGAGCTCCGGGAT 950 >seq366 Length=8788 Score = 87.8 bits (96), Expect = 2e-12 Identities = 178/262 (68%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 75009 TCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAAC 75068 ||||||| | | |||| |||| || ||||| ||||| || ||||| ||| | | Sbjct 6983 TCCTTGATGTACGTGTCGATCAGGAGCGAGTAAGTCTCGGAGTGAATGTTCTCCATCATG 6924 Query 75069 GACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATC--CTTTGAAAAATTCA 75126 |||| | ||||||| | || ||||| | |||||| || || | |||| ||| Sbjct 6923 ATCTGGAAGCCGTAGAAGCAACGGGCCTCGGGAATCTGGACTTCGGCGCTGAATCGCTCA 6864 Query 75127 TGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGA 75186 ||| ||||| |||||||||| || || |||||||| || || || | | || Sbjct 6863 A--CGAGGTTCTCGTTGACGATGCCATCAGAAGCGGCGAAGAATGCAAGGATGTGTGAGA 6806 Query 75187 TAAAGTGGCGCTCATCGTCAGTGAGTTTGTC---CCAATCCTTCAGGTCCCCCGCCAAAT 75243 | |||| ||||| || ||||| |||| ||| || | || ||| | ||||| Sbjct 6805 TGAAGTACTTTTCATCATCTGTGAGCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAAAT 6746 Query 75244 CAATCTCCTCGACCGTCCAGAA 75265 ||||||| ||| |||||||||| Sbjct 6745 CAATCTCTTCGGCCGTCCAGAA 6724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547157735176400