Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734275.1_202014-07-28] 8,190 sequences; 36,679,878 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1860 104 2e-17 >seq1860 Length=1327 Score = 104 bits (114), Expect = 2e-17 Identities = 266/400 (67%), Gaps = 10/400 (3%) Strand=Plus/Plus Query 27328 ACGTAAAACTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 27384 ||||||||||| | | ||| |||||||| || || |||| || | ||| ||| Sbjct 233 ACGTAAAACTGCGCAAACATG---TGGCACGGCGGCAGGACCATAAGCTTGAGGTCCTTG 289 Query 27385 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 27444 |||||||| || | | | ||||| | ||| | ||||| | | || || |||| Sbjct 290 GGGTTCCAAGCACTAAGAACCATGCGGCGGTCGTACGGGTTCGTGCGGAGCTTGTGCACG 349 Query 27445 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCT 27504 | | ||||| || || ||| |||| ||||||| | ||| ||||| || Sbjct 350 ACCTCGGCGAGCTGGTCGACGCCCTGGCCCGTGTAGTCTGCGTGGCAGTCGGTGTATTCG 409 Query 27505 GCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 27564 || || || || | ||||||||| ||||| || || |||||||| ||| | || | |||| Sbjct 410 GCGCCAAAGTGGCGCCATTGGAAGCCGTAGACGGGGCCCAGGTCGCCCACCTCGCGGTGC 469 Query 27565 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC- 27623 | || ||| | ||||| || || | | |||||| ||||||||||||| ||||| Sbjct 470 TGCAATCCCAGCCCGTCCAGGAACTCACGGCTGCCGTTGCCGTCCCAGATCTTGACCCCG 529 Query 27624 -CTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCA 27682 | || | || | ||| | | || | || ||||||||||||||||| | Sbjct 530 GCGTCGCTCAG-GGGCTTCGCCG-ACGTCGCGCCCGACACGAACCACAGCAGCTCGAGGA 587 Query 27683 CGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 |||||| | | ||||| | ||| ||||| || || || Sbjct 588 TCACGGCCCGCGAGAAGACGCGCTTCGTCGTCAGCAGAGG 627 Score = 82.4 bits (90), Expect = 6e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 27206 CTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGG 27265 |||| || ||| | | || ||||||| ||| || || | ||||||||| ||||| |||| Sbjct 30 CTAGACCCGTGGCACGCGCAATCATGTGCGTCAGCAGTGCGTAGCTGGCAATGTTGAAGG 89 Query 27266 GTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 27308 | || || || |||||||| | |||| |||||||||||| || Sbjct 90 GCACGCCTAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCA 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369470317407890