Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734345.1_202014-07-28] 7,027 sequences; 36,982,960 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1862 170 2e-37 seq2495 131 2e-25 seq2950 122 9e-23 seq2869 102 8e-17 >seq1862 Length=8804 Score = 170 bits (188), Expect = 2e-37 Identities = 278/395 (70%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| ||| | |||||| ||| || || | |||| | | ||||| Sbjct 7117 AGAAGGCCGACTGGGCTCTGAGGTGGATCACCGACAAGAAGTCAACCTTTGCCACGCGCC 7176 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 || | || ||||| | ||||||||| ||||||| || ||| ||| |||| || | Sbjct 7177 TGATCGCTTTCGCTGTCGTCGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTCT 7236 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| || ||||| ||||| || ||||||||| ||||||||||||||| | | Sbjct 7237 GGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCGCGTG 7296 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 | |||||||| || ||||||||||||| | |||||| || || | | || | Sbjct 7297 ATGAGGGTCTACACACCGACTTTGCCTGTCTCCTGTTCTCGCTCCTGAACAACAGGCCCA 7356 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 | || | || | |||||| || ||| || ||| || ||||| || || | Sbjct 7357 ACAAGGAGGTTGTGAAGGAGATTGTTGTCGATGCTGTCAAGATTGAGCAAGAGTTTCTTA 7416 Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339 | || ||| |||| |||| || ||||| | || || || | |||| ||| ||||| Sbjct 7417 CGGAGGCGTTGCC-CTGCGCCCTCCTGGGCATGAA-CGCCAACCTGATGAAGCAGTACAT 7474 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGG 117374 ||||| ||||| ||||| || || ||| |||| Sbjct 7475 TGAGTTTGTCGCTGACAGACTTCTTGTCGCCCTGG 7509 Score = 149 bits (164), Expect = 6e-31 Identities = 208/286 (73%), Gaps = 7/286 (2%) Strand=Plus/Plus Query 116637 TGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGT 116696 |||||| |||||||| ||||||||||| || |||||||| | ||| ||| | || ||| Sbjct 6701 TGTGGCAGATGTACAAGAAGGCCGAGGCCTCATTCTGGACGGCCGAAGAGATTGATTTGT 6760 Query 116697 CCAAGGA-CACGAGCGACTGGGAGCGCTTGAAC---GACAACGAGCGCCATTTCATCAAG 116752 ||||||| | | | ||||||| | | | | || | || | |||||| Sbjct 6761 CCAAGGATCTCCA-CGACTGGAACAACAAGCTCACAGATGATGAAAAGTACTTCATCTCA 6819 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || || || |||||||| || ||||||||||||||||| || || ||||| Sbjct 6820 CACATCCTTGCATTCTTCGCCGCTTCTGATGGCATCGTCAACGAGAACCTCGTTGAGCGA 6879 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || | || || ||| | ||||||| || |||||||||||||| |||||| || Sbjct 6880 TTCAGCGC-CGAAGTCCAGATTCCCGAGGCCCGTTGCTTCTACGGCTTCCAGATCATGAT 6938 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | ||||| || | || ||| ||| |||||||||||| Sbjct 6939 GGAGAACATTCACTCCGAGACTTACTCGCTCCTGATCGACACGTAC 6984 >seq2495 Length=15740 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| | || || || | | | Sbjct 3855 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC 3796 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| ||||| |||||| |||||||| Sbjct 3795 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 3736 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || ||||| ||||| || |||| | ||||| |||||||||| Sbjct 3735 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAAC 3676 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| ||| || || || ||| |||| Sbjct 3675 ATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCG 3641 >seq2950 Length=29710 Score = 122 bits (134), Expect = 9e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||||| || |||||||||||||| |||| || ||| | | Sbjct 24853 ATGCAAATCTTCGTCAAGACGCTTACCGGCAAAACCATCACACTCGAAGTTGAATCTTCA 24794 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||| ||| |||| ||||| ||||| ||||| | ||||| Sbjct 24793 GACACAATCGACAACG-TCAAATCAAAGATTCAAGACAAGGAGGGTATCCCGCCTGACCA 24735 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| |||||||| |||||||| || | | ||||| || ||||| Sbjct 24734 ACAACGTTTGATCTTTGCGGGCAAGCAGCTGGAGGATGGAAGAACCCTGTCTGATTACAA 24675 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || ||||||||| | || ||||| || ||| Sbjct 24674 TATTCAGAAGGAGTCGACTCTGCACCTTGTG 24644 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| ||||| || || ||| | || ||||| || || Sbjct 25309 ATGCAGATTTTCGTCAAAACCCTCACTGGCAAGACGATTACCTTGGAGGTCGAGTCCTCC 25250 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || || | ||||| ||||| || || ||||||| Sbjct 25249 GATACCATCGACAATGTAAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAA 25190 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || || | ||| || || ||||| || |||| || ||||| |||||||||| Sbjct 25189 CAACGCCTTATTTTCGCTGGAAAGCAGCTTGAGGACGGTCGGACCCTTTCCGACTACAAC 25130 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| |||||| ||| || ||| Sbjct 25129 ATCCAAAAGGAGAGCACCCTCCAT 25106 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| |||| || || | | ||| | | | | |||| ||||| Sbjct 25515 TCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTAGCGATACCATCGACAACG-TCAAG 25457 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| ||||| ||||| ||||||| || || || || | || ||| Sbjct 25456 TCGAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAACAGCGTCTTATTTTTGCCGGC 25397 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || || || || |||| || || || |||||||||||||||||||||| || || Sbjct 25396 AAGCAACTCGAGGACGGTCGGACACTTTCCGACTACAACATCCAGAAGGAGAGTACTCTC 25337 Query 40891 CATCTAGTGTTGCGC 40905 || || ||| | ||| Sbjct 25336 CACCTCGTGCTCCGC 25322 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| |||||||| | || ||||| | | Sbjct 25081 ATGCAGATCTTCGTCAAGACTTTGACGGGCAAGACCATCACGTTGGAGGTCGAGTCTTCA 25022 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | | || || | | | ||||| ||||| || || ||||||| Sbjct 25021 GACACGATTGACAATGTTAAATCCAAGA-TCCAAGACAAGGAGGGTATTCCTCCGGACCA 24963 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||||| |||| ||| || || ||| |||| || | ||||| || ||||||||| Sbjct 24962 ACAGCGACTGATCTTCGCTGGAAAGCAGTTGGAGGATGGACGCACGCTGTCCGACTACAA 24903 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| ||||| | || ||||| Sbjct 24902 CATCCAAAAGGAATCTACTCTGCA 24879 >seq2869 Length=12228 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || || ||||| ||||||||| | || ||||| || | |||| | Sbjct 5661 TTCGTGAAGACTCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCCTCGGACACGATC 5720 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | | ||| || |||| ||||| ||||| || ||| | ||||| || || || Sbjct 5721 GACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAACAGCGTCTT 5780 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||| |||| |||| || || ||| ||||||||||||||||||| Sbjct 5781 ATCTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTCTCCGACTACAACATCCAGAAG 5840 Query 40879 G 40879 | Sbjct 5841 G 5841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515173944433520