Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734345.1_202014-07-28] 7,027 sequences; 36,982,960 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2503 145 1e-28 seq1862 143 4e-28 seq6070 98.7 1e-14 >seq2503 Length=8237 Score = 145 bits (160), Expect = 1e-28 Identities = 187/258 (72%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 || ||||| || || |||||||| |||| | ||| ||||| ||||| ||| | || Sbjct 5290 CCGACGCTTTTCAACGCCGGCACACCGCAGGCTCAGTTGTCGTCATGCTTCCTGGTTGAT 5349 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| ||| || ||||| ||||| ||||| |||||| || || | |||||| Sbjct 5350 ATGAAGGACGACAGCATTGAGGGAATCTACGACACCCTCAAGACTTGTGCCATGATCTCC 5409 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| ||| ||||| |||||| | || || | || ||| | ||| |||| | Sbjct 5410 AAGATGGCTGGCGGTATCGGTCTCAACGTCCATCGCATCCGTGCCACTGGCTCCTATATC 5469 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || || ||||||||| || |||||| |||| |||||||| || || || ||| |||| Sbjct 5470 GCCGGTACCAACGGCACCTCGAACGGCATTGTTCCCATGCTGCGTGTGTTCAACAACACA 5529 Query 260165 GCGCGCTACGTCGACCAG 260182 || ||||||||||||||| Sbjct 5530 GCTCGCTACGTCGACCAG 5547 >seq1862 Length=8804 Score = 143 bits (158), Expect = 4e-28 Identities = 228/322 (71%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 1456460 GACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACGTGCCCAAG 1456519 |||||||||||||| || | | || | || ||||| ||| | || || ||| Sbjct 7314 GACTTTGCCTGTCTCCTGTTCTCGCTCCTGAACAACAGGCCCAACAAGGAGGTTGTGAAG 7373 Query 1456520 CAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTG 1456579 |||| | ||||| || ||| |||| ||| |||||||| | | ||| || |||| Sbjct 7374 GAGATTGTTGTCGATGCTGTCAAGATTGAGCAAGAGTTTCTTACGGAGGCGTTGCCCTGC 7433 Query 1456580 GCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639 || ||| | ||||||||||||| | || ||| ||||||||||| ||| ||||| ||| Sbjct 7434 GCCCTCCTGGGCATGAACGCCAAC-CTGATGAAGCAGTACATTGAGTTT-GTCGCTGACA 7491 Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699 | || || | || || || || ||||| |||||| | ||||||| ||| | Sbjct 7492 GACTTCTTGTCGCCCTGGGAAACG-AGAAGGTCTACCGTGCCACCAACCCATTCGATTTT 7550 Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTAC 1456758 |||||| ||||| |||| |||||||||||||| |||||| |||| |||||||||| Sbjct 7551 ATGGAGAACATCTCACTCGGCGGCAAGACCAACTTCTTCGAGAAACGCGTTGGCGAGTAC 7610 Query 1456759 GCCAAGGCCGGCGTCACCGCCA 1456780 || ||||| |||| |||| Sbjct 7611 CAAAAAGCCGGTGTCATGGCCA 7632 Score = 111 bits (122), Expect = 2e-18 Identities = 135/183 (74%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 1455885 TTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCT 1455944 |||||| ||| |||| || || || |||||| ||||||||||| ||||||||| Sbjct 6811 TTCATCTCACACATCCTTGCATTCTT-CGCCGCTTCTGATGGCATCGTCAACGAGAACCT 6869 Query 1455945 GGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCA 1456004 | | || || | || ||||| | || ||||| |||| || ||||| ||||| Sbjct 6870 CGTTGAGCGATTCAGCGCCGAAGTCCAGATTCCCGAGGCCCGTTGCTTCTACGGCTTCCA 6929 Query 1456005 GATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAA 1456064 |||| || || ||||| ||||| || || |||||||||||||||||||| ||| |||| Sbjct 6930 GATCATGATGGAGAACATTCACTCCGAGACTTACTCGCTCCTGATCGACACGTACATCAA 6989 Query 1456065 GGA 1456067 ||| Sbjct 6990 GGA 6992 Score = 93.3 bits (102), Expect = 6e-13 Identities = 117/157 (75%), Gaps = 9/157 (6%) Strand=Plus/Plus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCG 1456179 || |||||||||||||| ||| |||||||| ||||| || || || ||||||| Sbjct 7116 AAGAAGGCCGACTGGGCTCTGAGGTGGATCACCGACAAGAAG----TCAAC-CTTTGCCA 7170 Query 1456180 AGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCA 1456238 ||| || ||| || || | ||||||||| ||||| ||| || ||| | ||| Sbjct 7171 CGCGCCTGATCGCTTTCGCTGTCGTCGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCA 7230 Query 1456239 TCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||| |||||||||||||| ||||| ||||| ||||| Sbjct 7231 TCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCT 7267 >seq6070 Length=14496 Score = 98.7 bits (108), Expect = 1e-14 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 ||||| |||||||| |||||||||||||||||| | ||||||||| |||| || | || Sbjct 1949 GGCGCAGTCGGTGCCCGCACCACCGAGAGCCAGCTTCACCGCGAGCTGGCCTCTGGCCTA 1890 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCA 165864 || | ||| | |||||||| ||| |||||||||||| Sbjct 1889 TCGTTCCCCGTCGGCTTCAAGAACGGCACCGACGGCA 1853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177133432934374