Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734405.1_202014-07-28] 7,798 sequences; 36,113,398 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5770 176 1e-38 seq392 145 2e-29 seq5701 134 3e-26 >seq5770 Length=35665 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || |||||||| ||||| ||||| || || || || ||||| | ||||| Sbjct 24640 ACGAAGACGGAGCACAAGGTGCAGAGTCGACTCCTTCTGAATATTGTAATCAGACAGGGT 24699 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 |||||||| |||||||||||||| || ||||| | |||||||||||||| || | || Sbjct 24700 TCTTCCATCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGTTGGTCAGGCGGGATACC 24759 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| || |||||| ||| ||||| ||||| ||||| || |||||| ||||| Sbjct 24760 CTCCTTGTCTTGAATCTTTGATTTGACGTTGTCGATTGTGTCTGAAGATTCAACTTCGAG 24819 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || || ||||| || || | ||||| Sbjct 24820 TGTGATGGTTTTGCCGGTAAGCGTCTTGACGAAGATTTGCAT 24861 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || || ||| ||| ||||||||||| || || | |||||||| || || Sbjct 25106 AGGACCAAATGGAGGGTGCTCTCCTTTTGGATGTTGTAGTCGGAAAGGGTCCGACCGTCC 25165 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||| ||||||||||||||||| ||||||| || ||||||||| Sbjct 25166 TCAAGCTGCTTTCCAGCGAAAATAAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTGTCC 25225 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||| || ||| || ||||| | || |||||| Sbjct 25226 TGGATCTTCGACTTTACATTGTCGATGGTATCGGAGGACTCGACCTCCAAGGTAATCGTC 25285 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || || || | |||||| Sbjct 25286 TTGCCAGTGAGGGTTTTGACGAAAATCTGCAT 25317 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| ||||| || || ||||||||||| || || | || || | |||||| Sbjct 24878 AGGACCAAGTGCAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAGCGTGCGTCCATCC 24937 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| || || |||||||| ||||||| || |||||||| Sbjct 24938 TCCAACTGCTTTCCAGCGAAGATCAGTCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCT 24997 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || || || || ||||| || || ||||| | ||||| ||| Sbjct 24998 TGGATCTTGGATTTAACATTGTCAATCGTGTCTGAAGACTCGACCTCCAACGTGATGGTC 25057 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | |||||| || || | |||||| Sbjct 25058 TTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 25089 Score = 129 bits (142), Expect = 1e-24 Identities = 145/193 (75%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||| ||| || |||||||| || || | ||| |||| || || Sbjct 25334 AGCACGAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGGAAAGTGTCCGACCGTCC 25393 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| || || ||||| || |||||||| ||||| | || ||||||||| Sbjct 25394 TCGAGTTGCTTGCCGGCAAAAATAAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCC 25453 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| |||||||| || ||| || |||||||| ||||| Sbjct 25454 TGGATCTTCGACTTGACGTTGTCGATGGTATCGCTAGA---CTCCACCTCGAGGGTGATG 25510 Query 211080 GTCTTTCCCGTGA 211092 ||||| || |||| Sbjct 25511 GTCTTGCCAGTGA 25523 >seq392 Length=25639 Score = 145 bits (160), Expect = 2e-29 Identities = 162/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||| ||| || |||||||| || || | |||||||| || || Sbjct 11617 AGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCTGCCGTCC 11558 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| | ||| || ||||| || || | || ||||||||| Sbjct 11557 TCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 11498 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| || || || ||||||||||| ||| || ||||| || ||||| Sbjct 11497 TGGATCTTGGACTTGACATTGTCGATGGTGTC---GCTCGACTCCACCTCAAGGGTGATA 11441 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| ||||| || || | |||||| Sbjct 11440 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 11406 >seq5701 Length=12228 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | || || | || || |||| ||||||||| || |||||| Sbjct 5838 TTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAGATA 5779 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || ||||||||||| |||| ||| ||||||||||| ||||| ||||| || ||| Sbjct 5778 AGACGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCG 5719 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || ||||| | ||||| ||||| || || |||||||| || || Sbjct 5718 ATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAA 5660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159036186950270