Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734455.1_202014-07-28] 8,119 sequences; 36,391,227 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq7922 111 1e-19 seq5093 105 4e-18 >seq7922 Length=20657 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | ||| | || ||||| |||||| ||||| || ||||| || Sbjct 15824 CCGCCACGAAGACGGAGCACAAGGTGCAGAGTCGACTCCTTCTGAATATTGTAATCAGAC 15883 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || || || || || || ||||| || ||||| |||||||| ||||| Sbjct 15884 AGGGTTCTTCCATCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGTTGGTCAGGCGGG 15943 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| |||| ||| ||| | ||||||||| || || Sbjct 15944 ATACCCTCCTTGTCT-TGAATCTTTGATTTGACGTTGTCGATTGTGTCTGAAGATTCAAC 16002 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| ||||| | ||| || || || || ||||| Sbjct 16003 TTCGAGTGTGATGGTTTTGCCGGTAAGCGTCTTGACGAAGATTTGCAT 16050 Score = 107 bits (118), Expect = 1e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||||| |||||||||||||| ||||| || || ||||| || || Sbjct 16289 AGACGAAGGACCAAATGGAGGGTGCTCTCCTTTTGGATGTTGTAGTCGGAAAGGGTCCGA 16348 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || || || || || | || ||||||||||| || | |||||| Sbjct 16349 CCGTCCTCAAGCTGCTTTCCAGCGAAAATAAGGCGTTGTTGGTCCGGAGGAATACCCTCC 16408 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 16409 TTGTCCTGGATCTT 16422 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || ||||| |||||||| ||||| || || || || || || Sbjct 16061 AGACGCAGGACCAAGTGCAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAGCGTGCGT 16120 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || || || || || | |||||||||||||| || | |||||| Sbjct 16121 CCATCCTCCAACTGCTTTCCAGCGAAGATCAGTCGCTGTTGGTCCGGAGGAATACCCTCC 16180 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | |||||| | ||| |||||| ||| || |||| || Sbjct 16181 TTGTCTTGGATC-TTGGATTTAACATTGTCAATCGTGTCTGAAGACTCGACCTCCAACGT 16239 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || || || || || ||||||||| Sbjct 16240 GATGGTCTTGCCCGTCAAAGTCTTGACGAAGATCTGCATG 16279 >seq5093 Length=26073 Score = 105 bits (116), Expect = 4e-18 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||| | ||||| ||||||||||| || ||||| || || || || || | Sbjct 13986 AGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCTG 14045 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || |||||||| || || ||||| |||||||| || | |||||| Sbjct 14046 CCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGGGGGATACCCTCC 14105 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| |||| || | || || | || ||||| ||| |||||| || | || Sbjct 14106 TTGTCCTGGATC-TTGGACTTGACATTGTCGATGGTGTCGCTCG-ACTCCACCTCAAGGG 14163 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || || || || | || || || || ||||||||| Sbjct 14164 TGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 14204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314698457407727