Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734495.1_202014-07-28] 7,725 sequences; 36,288,354 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5430 104 2e-17 seq2288 91.5 1e-13 >seq5430 Length=16193 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||| || || || || ||| ||| | |||| |||||||| || || ||||| Sbjct 11163 TCCTTCTGAATATTGTAATCAGACAGGGTTCTTCCATCCTCCAGCTGCTTGCCCGCAAAG 11222 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||| ||||| |||| | ||||||||||| |||||| ||||||| Sbjct 11223 ATCAAACGTTGTTGGTCAGGCGGGATACCCTCCTTGTCTTGAATCTTTGATTTGACGTTG 11282 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||||| |||| || |||||||| || || || ||||| || Sbjct 11283 TCGATTGTGTCTGAAGATTCAACTTCGAGTGTGATGGTTTTGCCGGTAAGCGTCTTGACG 11342 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 11343 AAGATTTGCATA 11354 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || ||| || || ||||| ||||| || || | ||| |||| ||| Sbjct 11373 ACCAAGTGCAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAGCGTGCGTCCATCCTCC 11432 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| ||||| || || || ||||| || ||||| | || | ||||||||||| Sbjct 11433 AACTGCTTTCCAGCGAAGATCAGTCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTGG 11492 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||| || | |||| || | ||| || || | || ||||| || Sbjct 11493 ATCTTGGATTTAACATTGTCAATCGTGTCTGAAGACTCGACCTCCAACGTGATGGTCTTG 11552 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||| || ||||||||||| Sbjct 11553 CCCGTCAAAGTCTTGACGAAGATCTGCAT 11581 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/213 (69%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||||| || || || ||||| ||||| |||||| | || | || || Sbjct 11601 ACCAAATGGAGGGTGCTCTCCTTTTGGATGTTGTAGTCGGAAAGGGTCCGACCGTCCTCA 11660 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || || ||||| ||||| | || | ||||||||||| Sbjct 11661 AGCTGCTTTCCAGCGAAAATAAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGG 11720 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| || || || | ||||| || || ||| || || | ||| || || Sbjct 11721 ATCTTCGACTTTAC--AT--TGTCGATGGTATCGGAGGACTCGACCTCCAAGGTAATCGT 11776 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || ||||| || || || || |||||||| Sbjct 11777 CTTGCCAGTGAGGGTTTTGACGAAAATCTGCAT 11809 >seq2288 Length=26173 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/201 (71%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||| ||||| || ||| | | | || || ||||| || ||| Sbjct 12063 GTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCTGCCGTCCTCAAGCTGCTTGCCG 12004 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || | || |||||||| | || | ||||||||||| ||||| ||| Sbjct 12003 GCAAAGATCAAGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 11944 Query 34905 ACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || | ||||| || | | ||| || || | ||| || || || |||||||| Sbjct 11943 AC--AT--TGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAG 11888 Query 34961 AGTCTTCACAAAGATCTGCAT 34981 ||||| || ||||||||||| Sbjct 11887 GGTCTTGACGAAGATCTGCAT 11867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324603036253800