Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734515.1_202014-07-28] 7,603 sequences; 36,446,887 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6663 116 9e-21 seq2653 96.9 8e-15 >seq6663 Length=29693 Score = 116 bits (128), Expect = 9e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| || || || | |||||| || ||||| || || |||||| Sbjct 25353 TCCTTCTGGATGTTGTAGTCGGAAAGTGTCCGACCGTCCTCGAGTTGCTTGCCGGCAAAA 25412 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | |||||| || ||||| || || || || ||||| ||||| | || || || Sbjct 25413 ATAAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTG 25472 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || | ||||||||||| || ||||| || || || ||||| ||||| Sbjct 25473 TCGATGGTATCGCTAGACTCCACCTCGAGGGTGATGGTCTTGCCAGT 25519 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||||||||| || ||||| || ||||| || || || || || || || Sbjct 24663 GTCGACTCCTTCTGAATATTGTAATCAGACAGGGTTCTTCCATCCTCCAGCTGCTTGCCC 24722 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||||| ||||| || || || || || || |||||||||| ||| Sbjct 24723 GCAAAGATCAAACGTTGTTGGTCAGGCGGGATACCCTCCTTGTCTTGAATCTTTGATTTG 24782 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || ||| || || ||||| || || || || ||||| || Sbjct 24783 ACGTTGTCGATTGTGTCTGAAGATTCAACTTCGAGTGTGATGGTTTTGCCGGTAAGCGTC 24842 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 24843 TTGACGAAGATTTGCAT 24859 >seq2653 Length=12174 Score = 96.9 bits (106), Expect = 8e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| || || ||||| || ||||| | ||||| || | || || |||||||| || Sbjct 5785 TTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAGATA 5726 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | |||||| ||||| || ||||| || || ||||||||||| | || ||||| || Sbjct 5725 AGACGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCG 5666 Query 104492 ACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | || || | ||| || ||||| | || || ||||| ||||| || || || || || Sbjct 5665 ATCGTGTC-CGAGGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAA 5607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151286238323924