Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734525.1_202014-07-28] 9,213 sequences; 35,669,262 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq527 140 1e-27 seq4043 120 9e-22 >seq527 Length=14812 Score = 140 bits (154), Expect = 1e-27 Identities = 431/664 (65%), Gaps = 11/664 (2%) Strand=Plus/Plus Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || ||||| || |||||| ||||||| || || | ||| || || || || || Sbjct 5283 ATTATCGCCAATGACCAGGGTAACCGAACAACCCCGTCCTTCGTGGCGTTCACGGATACC 5342 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| |||| || ||| | || || || || | ||| || || | || || || Sbjct 5343 GAGCGTCTGATCGGAGATGCGGCCAAGAACCAGGTCGCTATGAACCCCCACAACACCGTC 5402 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAATCTGA 349440 || || || ||| | | |||||| | | || || ||| | || || | || Sbjct 5403 TTCGACGCGAAGAGGTTGATTGGTCGCAAGTTCTCCGACGCTGAGGTC----CAGGCCGA 5458 Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGT 349500 | || || || || || | || || | | | | | || || || | |||||||| Sbjct 5459 CATGAAGCACTTCCCCTTCAAGGTCGT-CGAGAGGTC--TGGCAAGCCTGTCATTGAGGT 5515 Query 349501 TGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGT 349560 || | || || || ||| || || || || || || ||||| ||||| || Sbjct 5516 CGAGTTCAAGGGAGAGTCAAAGCAGTTCACTCCTGAGGAGATCTCATCCATGGTCTTGAC 5575 Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTAC 349620 || ||| || | |||||| | || | |||| || || | | ||||| | || Sbjct 5576 CAAGATGCGTGAGACTGCTGAGTCTTACCTTGGTGGCACCGTCAACAACGCTGTCGTCAC 5635 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || || ||||| || || || | |||||| || || || ||||| || |||||| Sbjct 5636 CGTCCCCGCCTACTTCAACGACTCGCAGCGTCAGGCTACCAAGGATGCCGGTCTCATTGC 5695 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || | || || || | || || || || || ||||| || || || || || || || Sbjct 5696 TGGTCTGAACGTCCTCCGTATCATCAACGAGCCTACTGCCGCCGCCATCGCCTACGGTCT 5755 Query 349741 TGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800 ||| || | | || || || | |||||||| ||| | |||||||||||||| Sbjct 5756 TGACAAGAAGGTCGAGGGTGAGCGCAACGTGCTTATTTTCGATCTTGGTGGTGGTACTTT 5815 Query 349801 TGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860 ||||| || || || || |||| ||||| || || || || || | || |||||||| Sbjct 5816 CGATGTGTCGCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACCGCTGGTGA 5875 Query 349861 TACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATT 349920 || || | ||||| || || ||||| || ||| | ||| | || || | || || || Sbjct 5876 CACCCACTTGGGTGGTGAGGACTTTGACAACCGTTTGGTTACTCACTTCGCCAACGAGTT 5935 Query 349921 TAAG 349924 ||| Sbjct 5936 CAAG 5939 >seq4043 Length=13738 Score = 120 bits (132), Expect = 9e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || | ||| || || ||| ||||| || || || || Sbjct 10541 CATGCCACCACGGAGACGAAGGACCAAATGGAGGGTGCTCTCCTTTTGGATGTTGTAGTC 10482 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || |||||||| || || || ||||| || || || Sbjct 10481 GGAAAGGGTCCGACCGTCCTCAAGCTGCTTTCCAGCGAAAATAAGGCGTTGTTGGTCCGG 10422 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | |||||||| || || | ||| || | || Sbjct 10421 AGGAATACCCTCCTTGTCCTGGATCTTCGACTTTACATTGTCGATGGTATCGGAGGACTC 10362 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | |||| ||||| || || || ||||| || ||||||||||| Sbjct 10361 GACCTCCAAGGTAATCGTCTTGCCAGTGAGGGTTTTGACGAAAATCTGCAT 10311 Score = 113 bits (124), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || |||||||| || ||||| || || | Sbjct 10773 TTTGCATACCACCACGCAGACGCAGGACCAAGTGCAGAGTAGATTCCTTTTGGATGTTGT 10714 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || | || |||||||| ||||| || || || || | Sbjct 10713 AGTCGGACAGCGTGCGTCCATCCTCCAACTGCTTTCCAGCGAAGATCAGTCGCTGTTGGT 10654 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || || || || || | ||| ||||| ||||||| || || | Sbjct 10653 CCGGAGGAATACCCTCCTTGTCTTGGATCTTGGATTTAACATTGTCAATCGTGTCTGAAG 10594 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || | ||||| || || | || || || || |||||||| Sbjct 10593 ACTCGACCTCCAACGTGATGGTCTTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 10539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515075537003039