Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734605.1_202014-07-28] 8,881 sequences; 35,967,056 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5528 141 1e-28 >seq5528 Length=4897 Score = 141 bits (156), Expect = 1e-28 Identities = 562/875 (64%), Gaps = 16/875 (2%) Strand=Plus/Minus Query 69352 ATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAAC 69411 || || || || || | ||| || ||||| ||| ||| |||||||| || || ||| Sbjct 2630 ATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTACAGCATGAAC 2571 Query 69412 GGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATT 69471 || ||||||| ||| |||||| || | || || | ||||| | || || || Sbjct 2570 GGGTTACCAGTCTCAGTCTGAGCCTCCAGGATGGAATACCAAAGTTTCTGGGCCTTGATC 2511 Query 69472 ACGGTCTTGTAACGCTTCTCT---TTTTCATA-TTGTG-TATATAGCCGTTCGAATTCAT 69526 |||||| || ||| | | ||||| || | || | |||| ||||| || | Sbjct 2510 ---GTCTTGCGACCCTTACCGGCCTGCTCATACTTCTCATACAGAGCC--TCGAACTCTT 2456 Query 69527 CTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCAT 69586 | || | || | | ||||| || || || || |||||||| | ||| | | | Sbjct 2455 CACCGTAGCAGTCCGCGAGGCCAGGGCACTCGTTCGGGCACATCAAGGTCCAGTCGCCGT 2396 Query 69587 CATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGG 69646 | || ||| || ||||| || ||||| || ||||||||||| | || || || | || Sbjct 2395 TTTTCTCAACGCGCTTCATGAACAGATCAGGGATCCAAAGAGCGAGGAACAGGTCACGGG 2336 Query 69647 TTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAAT 69706 | | | || || ||||| || || | || ||||| ||||| | | ||| | | Sbjct 2335 CACGAATCTCCTCCTTTCCGTGGTTCTTCCTTAGGTCGAGGAACTCGAAGACATCTGCGT 2276 Query 69707 GCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGT 69766 |||| || || || || || || | | | || || || || || || ||||| || | || Sbjct 2275 GCCACGGCTCAAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGT 2216 Query 69767 ATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTG 69826 | | || ||||| || | || | |||||| |||| ||| || || || | || || | Sbjct 2215 AGCGAGCTGTGTTGTTGAACACACGCAGCATGGGAACAATGCCGTTCGAGGTGCCGTTGG 2156 Query 69827 TTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTG 69886 | || | ||||| || | || || || | | ||||| || || || | Sbjct 2155 TACCGGCGATATAGGAGCCAGTGGCACGGATGCGATGGACGTTGAGACCGATACCGCCAG 2096 Query 69887 CCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCAT 69946 |||| || ||||| | |||||| || | ||||| || || ||||| ||||| || | Sbjct 2095 CCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATTCCCTCAATGCTGTCGT 2036 Query 69947 CTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATA 70006 | |||| | || || || || |||| ||| || || || || || || | Sbjct 2035 CCTTCATATCAACCAGGAAGCATGACGACAACTGAGCCTGCGGTGTGCCGGCGTTGAAAA 1976 Query 70007 ATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTG 70066 || || || ||||| ||||| |||| ||| | || ||||| ||||| || || Sbjct 1975 GCGTCGGGGAGGCGTGTGTGAAGAATTTGCTAGACATAAGGTTGTAGGTTTCGATGACTC 1916 Query 70067 ATTCTAT-ATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGT 70125 || || | ||| | || |||| || |||||||| | ||| ||||| || | Sbjct 1915 GCTCAATGTTGTCACCCCAG-ATACCTACAGCAACACGCATGATCATGTGCTGTGGCCTC 1857 Query 70126 TCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAA 70185 || || | || ||| | ||||| ||||| || | || ||||| || || || ||| Sbjct 1856 TCGACAATCTTGCCATTGAGCTTCAATAGGTAAGACCTCTCGAGAGTCTTGAAGCCGAAA 1797 Query 70186 TAGTTGTA--TGAAAAGTCTCTTTCGTAAATAATA 70218 || | ||| ||||| || | ||||| | |||| Sbjct 1796 TATTGGTAGTTGAAA--TCACGGTCGTAGACAATA 1764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686832544536840