Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734635.1_202014-07-28] 9,202 sequences; 35,774,258 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5828 120 2e-22 seq2408 105 4e-18 >seq5828 Length=11365 Score = 120 bits (132), Expect = 2e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||||| |||||||||||||| ||||| || || ||||| || || Sbjct 4053 AGACGAAGGACCAAATGGAGGGTGCTCTCCTTTTGGATGTTGTAGTCGGAAAGGGTCCGA 4112 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || || || || || | || ||||||||||| || | |||||| Sbjct 4113 CCGTCCTCAAGCTGCTTTCCAGCGAAAATAAGGCGTTGTTGGTCCGGAGGAATACCCTCC 4172 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 ||||| |||||| |||| || || || | ||| || |||| ||| Sbjct 4173 TTGTCCTGGATCTTCGACTTTACATTGTCGATGGTATCGGAGGACTCGACCTCCAAGGTA 4232 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || || || | ||||| || |||||||||||| Sbjct 4233 ATCGTCTTGCCAGTGAGGGTTTTGACGAAAATCTGCATG 4271 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | ||| | || ||||| |||||| ||||| || ||||| || Sbjct 3588 CCGCCACGAAGACGGAGCACAAGGTGCAGAGTCGACTCCTTCTGAATATTGTAATCAGAC 3647 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || || || || || || ||||| || ||||| |||||||| ||||| Sbjct 3648 AGGGTTCTTCCATCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGTTGGTCAGGCGGG 3707 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| |||| ||| ||| | ||||||||| || || Sbjct 3708 ATACCCTCCTTGTCT-TGAATCTTTGATTTGACGTTGTCGATTGTGTCTGAAGATTCAAC 3766 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| ||||| | ||| || || || || ||||| Sbjct 3767 TTCGAGTGTGATGGTTTTGCCGGTAAGCGTCTTGACGAAGATTTGCAT 3814 Score = 111 bits (122), Expect = 1e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||||| || ||||| || || |||||||| || |||| || ||||| Sbjct 4296 TGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGGAAAGTGTCCGACCGTCCTCGAGTTGC 4355 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || |||||||| || | ||||||||||||||| || | ||||||||||| |||||| Sbjct 4356 TTGCCGGCAAAAATAAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTT 4414 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || ||||| |||||||| ||||| || || || || || || Sbjct 3825 AGACGCAGGACCAAGTGCAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAGCGTGCGT 3884 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || || || || || | |||||||||||||| || | |||||| Sbjct 3885 CCATCCTCCAACTGCTTTCCAGCGAAGATCAGTCGCTGTTGGTCCGGAGGAATACCCTCC 3944 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | |||||| | ||| |||||| ||| || |||| || Sbjct 3945 TTGTCTTGGATC-TTGGATTTAACATTGTCAATCGTGTCTGAAGACTCGACCTCCAACGT 4003 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || || || || || ||||||||| Sbjct 4004 GATGGTCTTGCCCGTCAAAGTCTTGACGAAGATCTGCATG 4043 >seq2408 Length=15588 Score = 105 bits (116), Expect = 4e-18 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||| | ||||| ||||||||||| || ||||| || || || || || | Sbjct 12015 AGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCTG 11956 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || |||||||| || || ||||| |||||||| || | |||||| Sbjct 11955 CCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGGGGGATACCCTCC 11896 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| |||| || | || || | || ||||| ||| |||||| || | || Sbjct 11895 TTGTCCTGGATC-TTGGACTTGACATTGTCGATGGTGTCGCTCG-ACTCCACCTCAAGGG 11838 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || || || || | || || || || ||||||||| Sbjct 11837 TGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 11797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314694303272066