Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734635.1_202014-07-28] 9,202 sequences; 35,774,258 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5828 145 2e-29 seq2408 129 1e-24 seq9101 116 9e-21 >seq5828 Length=11365 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||| || || ||||| ||| | ||||| || ||| || Sbjct 4267 CAGATTTTCGTCAAAACCCTCACTGGCAAGACGATTACCTTGGAGGTCGAGTCCTCCGAT 4208 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || || ||||||||||| ||| Sbjct 4207 ACCATCGACAATGTAAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAACAA 4148 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| ||||| ||||| || || || |||| ||| |||| || ||| || Sbjct 4147 CGCCTTATTTTCGCTGGAAAGCAGCTTGAGGACGGTCGGACCCTTTCCGACTACAACATC 4088 Query 178104 CAAAAAGA 178111 ||||| || Sbjct 4087 CAAAAGGA 4080 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || || || ||||| | ||||| || |||||| Sbjct 4039 CAGATCTTCGTCAAGACTTTGACGGGCAAGACCATCACGTTGGAGGTCGAGTCTTCAGAC 3980 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||| || ||||| || || || ||||||||||| || Sbjct 3979 ACGATTGACAATGTTAAATCCAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAACAG 3920 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| |||||||| ||||| ||| | || |||||| | || || |||| || ||| || Sbjct 3919 CGACTGATCTTCGCTGGAAAGCAGTTGGAGGATGGACGCACGCTGTCCGACTACAACATC 3860 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || ||||| |||| Sbjct 3859 CAAAAGGAATCTACTCTGCA-CTTG 3836 Score = 127 bits (140), Expect = 5e-24 Identities = 132/172 (77%), Gaps = 6/172 (3%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATCGAGAACGTCA 177999 |||| || || || ||||||||||||||||| ||| || |||||||| ||||||| Sbjct 4476 TCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTAGC---GATACCATCGACAACGTCA 4420 Query 178000 AACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCG 178059 | ||||| |||||||| || || |||||||||||||| || || ||||| || |||| Sbjct 4419 AGTCGAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAACAGCGTCTTATTTTTGCCG 4360 Query 178060 GAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 | || || ||||| || || |||| ||| |||| || ||| |||| || || Sbjct 4359 GCAAGCAACTCGAGGACGGTCGGACACTTTCCGACTACAACATCCAGAAGGA 4308 >seq2408 Length=15588 Score = 129 bits (142), Expect = 1e-24 Identities = 144/191 (75%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || ||||| || || ||||| || || || |||||||| |||||||| ||| Sbjct 11801 CAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC--- 11857 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| || ||||| ||||| |||||||| || || ||||| ||||||||| Sbjct 11858 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 11917 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || | ||||| ||||| || ||||| || || || ||||| || |||| || ||| Sbjct 11918 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAAC 11977 Query 178101 GTCCAAAAAGA 178111 |||| || || Sbjct 11978 ATCCAGAAGGA 11988 >seq9101 Length=24267 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 |||||||| ||||| || || || || |||||| | ||||| || ||| ||||| ||| Sbjct 18580 TTCGTGAAGACTCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCCTCGGACACGATC 18521 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || || || |||||||||||||| || ||||| || || ||||| || || ||| Sbjct 18520 GACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAACAGCGTCTT 18461 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||| || || || ||| | || || || | ||||| |||| || ||| |||| || Sbjct 18460 ATCTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTCTCCGACTACAACATCCAGAA 18402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203589279339188