Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734675.1_202014-07-28] 8,535 sequences; 35,946,122 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2247 170 2e-37 seq2184 131 2e-25 seq6263 122 9e-23 seq5800 102 8e-17 >seq2247 Length=8784 Score = 170 bits (188), Expect = 2e-37 Identities = 278/395 (70%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| ||| | |||||| ||| || || | |||| | | ||||| Sbjct 7119 AGAAGGCCGACTGGGCTCTGAGGTGGATCACCGACAAGAAGTCAACCTTTGCCACGCGCC 7178 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 || | || ||||| | ||||||||| ||||||| || ||| ||| |||| || | Sbjct 7179 TGATCGCTTTCGCTGTCGTCGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTCT 7238 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| || ||||| ||||| || ||||||||| ||||||||||||||| | | Sbjct 7239 GGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCGCGTG 7298 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 | |||||||| || ||||||||||||| | |||||| || || | | || | Sbjct 7299 ATGAGGGTCTACACACCGACTTTGCCTGTCTCCTGTTCTCGCTCCTGAACAACAGGCCCA 7358 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 | || | || | |||||| || ||| || ||| || ||||| || || | Sbjct 7359 ACAAGGAGGTTGTGAAGGAGATTGTTGTCGATGCTGTCAAGATTGAGCAAGAGTTTCTTA 7418 Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339 | || ||| |||| |||| || ||||| | || || || | |||| ||| ||||| Sbjct 7419 CGGAGGCGTTGCC-CTGCGCCCTCCTGGGCATGAA-CGCCAACCTGATGAAGCAGTACAT 7476 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGG 117374 ||||| ||||| ||||| || || ||| |||| Sbjct 7477 TGAGTTTGTCGCTGACAGACTTCTTGTCGCCCTGG 7511 Score = 149 bits (164), Expect = 6e-31 Identities = 208/286 (73%), Gaps = 7/286 (2%) Strand=Plus/Plus Query 116637 TGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGT 116696 |||||| |||||||| ||||||||||| || |||||||| | ||| ||| | || ||| Sbjct 6703 TGTGGCAGATGTACAAGAAGGCCGAGGCCTCATTCTGGACGGCCGAAGAGATTGATTTGT 6762 Query 116697 CCAAGGA-CACGAGCGACTGGGAGCGCTTGAAC---GACAACGAGCGCCATTTCATCAAG 116752 ||||||| | | | ||||||| | | | | || | || | |||||| Sbjct 6763 CCAAGGATCTCCA-CGACTGGAACAACAAGCTCACAGATGATGAAAAGTACTTCATCTCA 6821 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || || || |||||||| || ||||||||||||||||| || || ||||| Sbjct 6822 CACATCCTTGCATTCTTCGCCGCTTCTGATGGCATCGTCAACGAGAACCTCGTTGAGCGA 6881 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || | || || ||| | ||||||| || |||||||||||||| |||||| || Sbjct 6882 TTCAGCGC-CGAAGTCCAGATTCCCGAGGCCCGTTGCTTCTACGGCTTCCAGATCATGAT 6940 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | ||||| || | || ||| ||| |||||||||||| Sbjct 6941 GGAGAACATTCACTCCGAGACTTACTCGCTCCTGATCGACACGTAC 6986 >seq2184 Length=15654 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| | || || || | | | Sbjct 11866 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC 11925 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| ||||| |||||| |||||||| Sbjct 11926 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 11985 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || ||||| ||||| || |||| | ||||| |||||||||| Sbjct 11986 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAAC 12045 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| ||| || || || ||| |||| Sbjct 12046 ATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCG 12080 >seq6263 Length=8206 Score = 122 bits (134), Expect = 9e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||||| || |||||||||||||| |||| || ||| | | Sbjct 3596 ATGCAAATCTTCGTCAAGACGCTTACCGGCAAAACCATCACACTCGAAGTTGAATCTTCA 3537 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||| ||| |||| ||||| ||||| ||||| | ||||| Sbjct 3536 GACACAATCGACAACG-TCAAATCAAAGATTCAAGACAAGGAGGGTATCCCGCCTGACCA 3478 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| |||||||| |||||||| || | | ||||| || ||||| Sbjct 3477 ACAACGTTTGATCTTTGCGGGCAAGCAGCTGGAGGATGGAAGAACCCTGTCTGATTACAA 3418 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || ||||||||| | || ||||| || ||| Sbjct 3417 TATTCAGAAGGAGTCGACTCTGCACCTTGTG 3387 Score = 102 bits (112), Expect = 8e-17 Identities = 134/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| |||| || || | | ||| | | | | |||| ||||| Sbjct 4030 TCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTAGCGATACCATCGACAACG-TCAAG 3972 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| ||||| || || ||||||| ||||| || || | ||| || Sbjct 3971 TCGAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAACAACGCCTTATTTTCGCTGGA 3912 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || |||| || ||||| ||||||||||||||| |||||| ||| || Sbjct 3911 AAGCAGCTTGAGGACGGTCGGACCCTTTCCGACTACAACATCCAAAAGGAGAGCACCCTC 3852 Query 40891 CAT 40893 ||| Sbjct 3851 CAT 3849 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| |||||||| | || ||||| | | Sbjct 3824 ATGCAGATCTTCGTCAAGACTTTGACGGGCAAGACCATCACGTTGGAGGTCGAGTCTTCA 3765 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | | || || | | | ||||| ||||| || || ||||||| Sbjct 3764 GACACGATTGACAATGTTAAATCCAAGA-TCCAAGACAAGGAGGGTATTCCTCCGGACCA 3706 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||||| |||| ||| || || ||| |||| || | ||||| || ||||||||| Sbjct 3705 ACAGCGACTGATCTTCGCTGGAAAGCAGTTGGAGGATGGACGCACGCTGTCCGACTACAA 3646 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| ||||| | || ||||| Sbjct 3645 CATCCAAAAGGAATCTACTCTGCA 3622 >seq5800 Length=12227 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || || ||||| ||||||||| | || ||||| || | |||| | Sbjct 5658 TTCGTGAAGACTCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCCTCGGACACGATC 5717 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | | ||| || |||| ||||| ||||| || ||| | ||||| || || || Sbjct 5718 GACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAACAGCGTCTT 5777 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||| |||| |||| || || ||| ||||||||||||||||||| Sbjct 5778 ATCTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTCTCCGACTACAACATCCAGAAG 5837 Query 40879 G 40879 | Sbjct 5838 G 5838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515164232551600