Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734675.1_202014-07-28] 8,535 sequences; 35,946,122 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4608 145 1e-28 seq2247 143 4e-28 seq4219 98.7 1e-14 >seq4608 Length=4661 Score = 145 bits (160), Expect = 1e-28 Identities = 187/258 (72%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 || ||||| || || |||||||| |||| | ||| ||||| ||||| ||| | || Sbjct 1737 CCGACGCTTTTCAACGCCGGCACACCGCAGGCTCAGTTGTCGTCATGCTTCCTGGTTGAT 1796 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| ||| || ||||| ||||| ||||| |||||| || || | |||||| Sbjct 1797 ATGAAGGACGACAGCATTGAGGGAATCTACGACACCCTCAAGACTTGTGCCATGATCTCC 1856 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| ||| ||||| |||||| | || || | || ||| | ||| |||| | Sbjct 1857 AAGATGGCTGGCGGTATCGGTCTCAACGTCCATCGCATCCGTGCCACTGGCTCCTATATC 1916 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || || ||||||||| || |||||| |||| |||||||| || || || ||| |||| Sbjct 1917 GCCGGTACCAACGGCACCTCGAACGGCATTGTTCCCATGCTGCGTGTGTTCAACAACACA 1976 Query 260165 GCGCGCTACGTCGACCAG 260182 || ||||||||||||||| Sbjct 1977 GCTCGCTACGTCGACCAG 1994 >seq2247 Length=8784 Score = 143 bits (158), Expect = 4e-28 Identities = 228/322 (71%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 1456460 GACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACGTGCCCAAG 1456519 |||||||||||||| || | | || | || ||||| ||| | || || ||| Sbjct 7316 GACTTTGCCTGTCTCCTGTTCTCGCTCCTGAACAACAGGCCCAACAAGGAGGTTGTGAAG 7375 Query 1456520 CAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTG 1456579 |||| | ||||| || ||| |||| ||| |||||||| | | ||| || |||| Sbjct 7376 GAGATTGTTGTCGATGCTGTCAAGATTGAGCAAGAGTTTCTTACGGAGGCGTTGCCCTGC 7435 Query 1456580 GCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639 || ||| | ||||||||||||| | || ||| ||||||||||| ||| ||||| ||| Sbjct 7436 GCCCTCCTGGGCATGAACGCCAAC-CTGATGAAGCAGTACATTGAGTTT-GTCGCTGACA 7493 Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699 | || || | || || || || ||||| |||||| | ||||||| ||| | Sbjct 7494 GACTTCTTGTCGCCCTGGGAAACG-AGAAGGTCTACCGTGCCACCAACCCATTCGATTTT 7552 Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTAC 1456758 |||||| ||||| |||| |||||||||||||| |||||| |||| |||||||||| Sbjct 7553 ATGGAGAACATCTCACTCGGCGGCAAGACCAACTTCTTCGAGAAACGCGTTGGCGAGTAC 7612 Query 1456759 GCCAAGGCCGGCGTCACCGCCA 1456780 || ||||| |||| |||| Sbjct 7613 CAAAAAGCCGGTGTCATGGCCA 7634 Score = 111 bits (122), Expect = 2e-18 Identities = 135/183 (74%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 1455885 TTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCT 1455944 |||||| ||| |||| || || || |||||| ||||||||||| ||||||||| Sbjct 6813 TTCATCTCACACATCCTTGCATTCTT-CGCCGCTTCTGATGGCATCGTCAACGAGAACCT 6871 Query 1455945 GGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCA 1456004 | | || || | || ||||| | || ||||| |||| || ||||| ||||| Sbjct 6872 CGTTGAGCGATTCAGCGCCGAAGTCCAGATTCCCGAGGCCCGTTGCTTCTACGGCTTCCA 6931 Query 1456005 GATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAA 1456064 |||| || || ||||| ||||| || || |||||||||||||||||||| ||| |||| Sbjct 6932 GATCATGATGGAGAACATTCACTCCGAGACTTACTCGCTCCTGATCGACACGTACATCAA 6991 Query 1456065 GGA 1456067 ||| Sbjct 6992 GGA 6994 Score = 93.3 bits (102), Expect = 6e-13 Identities = 117/157 (75%), Gaps = 9/157 (6%) Strand=Plus/Plus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCG 1456179 || |||||||||||||| ||| |||||||| ||||| || || || ||||||| Sbjct 7118 AAGAAGGCCGACTGGGCTCTGAGGTGGATCACCGACAAGAAG----TCAAC-CTTTGCCA 7172 Query 1456180 AGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCA 1456238 ||| || ||| || || | ||||||||| ||||| ||| || ||| | ||| Sbjct 7173 CGCGCCTGATCGCTTTCGCTGTCGTCGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCA 7232 Query 1456239 TCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||| |||||||||||||| ||||| ||||| ||||| Sbjct 7233 TCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCT 7269 >seq4219 Length=6280 Score = 98.7 bits (108), Expect = 1e-14 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 ||||| |||||||| |||||||||||||||||| | ||||||||| |||| || | || Sbjct 4430 GGCGCAGTCGGTGCCCGCACCACCGAGAGCCAGCTTCACCGCGAGCTGGCCTCTGGCCTA 4489 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCA 165864 || | ||| | |||||||| ||| |||||||||||| Sbjct 4490 TCGTTCCCCGTCGGCTTCAAGAACGGCACCGACGGCA 4526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176987983562670