Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734675.1_202014-07-28] 8,535 sequences; 35,946,122 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2184 140 3e-28 seq6263 125 6e-24 seq6923 82.4 7e-11 >seq2184 Length=15654 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||| | || | || |||||||| || |||||||| |||| | Sbjct 12092 CCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 12033 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| | |||| || |||||||| || ||||| ||||| ||||||||||||| || Sbjct 12032 AGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGGGGG 11973 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||| | | | | | ||||||||||| |||||| Sbjct 11972 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGACTCCACC 11913 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||| | || || || || |||||||| Sbjct 11912 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 11866 >seq6263 Length=8206 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | ||| |||||||| |||||||| |||| | Sbjct 3598 CCACCACGCAGACGCAGGACCAAGTGCAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 3657 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||| || || || |||| ||||| ||||||| |||| Sbjct 3658 AGCGTGCGTCCATCCTCCAACTGCTTTCCAGCGAAGATCAGTCGCTGTTGGTCCGGAGGA 3717 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| |||||| || | | | | | |||||| || || ||| Sbjct 3718 ATACCCTCCTTGTCTTGGATCTTGGATTTAACATTGTCAATCGTGTCTGAAGACTCGACC 3777 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||||| || || ||||||||||| || || || |||||||| Sbjct 3778 TCCAACGTGATGGTCTTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 3824 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| | || ||||||||||| |||||||| |||| Sbjct 3826 CCACCACGGAGACGAAGGACCAAATGGAGGGTGCTCTCCTTTTGGATGTTGTAGTCGGAA 3885 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || |||||||| || || || || | || || ||||||| |||| Sbjct 3886 AGGGTCCGACCGTCCTCAAGCTGCTTTCCAGCGAAAATAAGGCGTTGTTGGTCCGGAGGA 3945 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||||||| |||||| ||| | |||| | | || ||||| || ||||| Sbjct 3946 ATACCCTCCTTGTCCTGGATCTTCGACTTGA-CGTTGTCGATGGTATCGCTAGACTCCAC 4004 Query 35689 CTCCACCGTGATCGTTTTACCCGT 35712 ||| | ||||| || || || || Sbjct 4005 CTCGAGGGTGATGGTCTTGCCAGT 4028 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||| |||||||| | || ||||| | || ||||||||||| |||||||| Sbjct 3405 CTCCTTCTGAATATTGTAATCAGACAGGGTTCTTCCATCCTCCAGCTGCTTGCCCGCAAA 3464 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| || || ||||| | || | | |||||||| | ||| |||| || || Sbjct 3465 GATCAAACGTTGTTGGTCAGGCGGGATACCCTCCTTGT-CTTGAATCTTTGATTTGACGT 3523 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| ||||| || || | ||||| ||||| || || | || || | Sbjct 3524 TGTCGATTGTGTCTGAAGATTCAACTTCGAGTGTGATGGTTTTGCCGGTAAGCGTCTTGA 3583 Query 35724 CAAATATCTGCAT 35736 | || || ||||| Sbjct 3584 CGAAGATTTGCAT 3596 >seq6923 Length=256 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 ||||||||||| || |||||||| |||| | || || |||| || || ||||| || Sbjct 139 GTACTCTCCTTCTGGATGTTGTAGTCGGAAAGTGTCCGACCGTCCTCGAGTTGCTTGCCG 198 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 ||||| || | ||||| ||||||| ||| | | |||||||||| |||||| Sbjct 199 GCAAAAATAAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTT 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450745505957800