Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734675.1_202014-07-28] 8,535 sequences; 35,946,122 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6263 136 1e-26 seq2184 129 1e-24 seq5800 116 9e-21 seq6923 89.7 1e-12 >seq6263 Length=8206 Score = 136 bits (150), Expect = 1e-26 Identities = 134/172 (78%), Gaps = 6/172 (3%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATCGAGAACGTCA 177999 |||| || || || ||||||||||||||||| ||| || |||||||| ||||||| Sbjct 4030 TCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTAGC---GATACCATCGACAACGTCA 3974 Query 178000 AACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCG 178059 | ||||| |||||||| || || || ||||||||||| ||||| ||||| ||||| | Sbjct 3973 AGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAACAACGCCTTATTTTCGCTG 3914 Query 178060 GAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 |||| ||||| || || || |||| ||| |||| || ||| ||||||| || Sbjct 3913 GAAAGCAGCTTGAGGACGGTCGGACCCTTTCCGACTACAACATCCAAAAGGA 3862 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || || || ||||| | ||||| || |||||| Sbjct 3821 CAGATCTTCGTCAAGACTTTGACGGGCAAGACCATCACGTTGGAGGTCGAGTCTTCAGAC 3762 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||| || ||||| || || || ||||||||||| || Sbjct 3761 ACGATTGACAATGTTAAATCCAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAACAG 3702 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| |||||||| ||||| ||| | || |||||| | || || |||| || ||| || Sbjct 3701 CGACTGATCTTCGCTGGAAAGCAGTTGGAGGATGGACGCACGCTGTCCGACTACAACATC 3642 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || ||||| |||| Sbjct 3641 CAAAAGGAATCTACTCTGCA-CTTG 3618 >seq2184 Length=15654 Score = 129 bits (142), Expect = 1e-24 Identities = 144/191 (75%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || ||||| || || ||||| || || || |||||||| |||||||| ||| Sbjct 11869 CAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC--- 11925 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| || ||||| ||||| |||||||| || || ||||| ||||||||| Sbjct 11926 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 11985 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || | ||||| ||||| || ||||| || || || ||||| || |||| || ||| Sbjct 11986 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAAC 12045 Query 178101 GTCCAAAAAGA 178111 |||| || || Sbjct 12046 ATCCAGAAGGA 12056 >seq5800 Length=12227 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 |||||||| ||||| || || || || |||||| | ||||| || ||| ||||| ||| Sbjct 5658 TTCGTGAAGACTCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCCTCGGACACGATC 5717 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || || || |||||||||||||| || ||||| || || ||||| || || ||| Sbjct 5718 GACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAACAGCGTCTT 5777 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||| || || || ||| | || || || | ||||| |||| || ||| |||| || Sbjct 5778 ATCTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTCTCCGACTACAACATCCAGAA 5836 >seq6923 Length=256 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || |||||||||||||| || || ||||| || ||||| || Sbjct 251 AAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAACAGCGTCTTATTTTTGCCGGCAAG 192 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 || ||||| || || |||| ||| |||| || ||| |||| || || Sbjct 191 CAACTCGAGGACGGTCGGACACTTTCCGACTACAACATCCAGAAGGA 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203599566350790