Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734735.1_202014-07-28] 9,152 sequences; 36,003,007 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq5054 104 2e-17 seq5055 86.0 5e-12 >seq5054 Length=1418 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 29821 CCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGG 29880 |||||| ||| || ||| || || || ||||| | ||| ||||| ||| || | Sbjct 1069 CCTGTTGATCTCGAGCTCGGGGAACGGCCTCGGCTCGCGCTCCAGCTGCGTCCGGAGTGC 1128 Query 29881 TTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTC 29940 || |||| || |||||||||||| || |||| | ||| | | || || | Sbjct 1129 GTCGACGTGGTCGGCGTAGACGTGAGCATCGCCCATGACGTGCGTCAGCGACCCGGGCAC 1188 Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000 ||| || ||| | | || ||||||| ||| || || | ||||||||| ||||| ||||| Sbjct 1189 TAGACCCGTGGCACGCGCAATCATGTGCGTCAGCAGTGCGTAGCTGGCAATGTTGAAGGG 1248 Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 || || || |||||||| | |||| |||||||||||| || Sbjct 1249 CACGCCTAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCA 1290 >seq5055 Length=16026 Score = 86.0 bits (94), Expect = 5e-12 Identities = 173/253 (68%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 30206 CCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCG 30265 |||| ||||||||| ||| ||||| || || || || || | ||| ||||| ||| Sbjct 7 CCCGTGTAGTCTGCGTGGCAGTCGGTGTATTCGGCGCCAAAGTGGCGCCATTGGAAGCCG 66 Query 30266 TACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCT 30325 || || || |||||||| ||| | || | ||||| || ||| | ||||| || || Sbjct 67 TAGACGGGGCCCAGGTCGCCCACCTCGCGGTGCTGCAATCCCAGCCCGTCCAGGAACTCA 126 Query 30326 CTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCTCAGAGAGCTCTTTGGAGTTTG 30383 | | |||||| ||||||||||||| ||||| | || | || | ||| | | | Sbjct 127 CGGCTGCCGTTGCCGTCCCAGATCTTGACCCCGGCGTCGCTCAG-GGGCTTCGCCG-ACG 184 Query 30384 TGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGG 30443 | | || ||||||||||||||||| | |||||| | | ||||| | ||| | Sbjct 185 TCGCGCCCGACACGAACCACAGCAGCTCGAGGATCACGGCCCGCGAGAAGACGCGCTTCG 244 Query 30444 TCGTGAGGAGGGG 30456 |||| || || || Sbjct 245 TCGTCAGCAGAGG 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406265080137984