Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734735.1_202014-07-28] 9,152 sequences; 36,003,007 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq5054 107 1e-18 seq5055 86.0 5e-12 >seq5054 Length=1418 Score = 107 bits (118), Expect = 1e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 27087 CCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGG 27146 |||||| ||| || ||| || || || ||||| | ||| ||||| ||| || | Sbjct 1069 CCTGTTGATCTCGAGCTCGGGGAACGGCCTCGGCTCGCGCTCCAGCTGCGTCCGGAGTGC 1128 Query 27147 TTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTC 27206 || ||||| || |||||||||||| || |||| | ||| | | || || | Sbjct 1129 GTCGACGTGGTCGGCGTAGACGTGAGCATCGCCCATGACGTGCGTCAGCGACCCGGGCAC 1188 Query 27207 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 27266 ||| || ||| | | || ||||||| ||| || || | ||||||||| ||||| ||||| Sbjct 1189 TAGACCCGTGGCACGCGCAATCATGTGCGTCAGCAGTGCGTAGCTGGCAATGTTGAAGGG 1248 Query 27267 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 27308 || || || |||||||| | |||| |||||||||||| || Sbjct 1249 CACGCCTAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCA 1290 >seq5055 Length=16026 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 27492 GTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCC 27551 ||| ||||| || || || || || | ||||||||| ||||| || || |||||||| || Sbjct 27 GTCGGTGTATTCGGCGCCAAAGTGGCGCCATTGGAAGCCGTAGACGGGGCCCAGGTCGCC 86 Query 27552 CTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA 27611 | | || | ||||| || ||| | ||||| || || | | |||||| ||||||| Sbjct 87 CACCTCGCGGTGCTGCAATCCCAGCCCGTCCAGGAACTCACGGCTGCCGTTGCCGTCCCA 146 Query 27612 GATCTTTACCCC--CTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCAC 27669 |||||| ||||| | || | || | ||| | | || | || ||||||||| Sbjct 147 GATCTTGACCCCGGCGTCGCTCAG-GGGCTTCGCCG-ACGTCGCGCCCGACACGAACCAC 204 Query 27670 AGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 |||||||| | |||||| | | ||||| | ||| ||||| || || || Sbjct 205 AGCAGCTCGAGGATCACGGCCCGCGAGAAGACGCGCTTCGTCGTCAGCAGAGG 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369465985166912