Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F001675605.1_202016-06-23] 4,301 sequences; 42,962,175 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3103 143 8e-29 seq3189 120 9e-22 seq2996 84.2 7e-11 >seq3103 Length=69540 Score = 143 bits (158), Expect = 8e-29 Identities = 432/664 (65%), Gaps = 11/664 (2%) Strand=Plus/Minus Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || ||||| || |||||| ||||||| || || | ||| || || || || || Sbjct 17051 ATTATCGCCAATGACCAGGGTAACCGAACAACCCCGTCCTTCGTGGCGTTCACGGATACC 16992 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| ||||||| ||| | || || || || | ||| || || | || || || Sbjct 16991 GAGCGTCTGATTGGAGATGCGGCCAAGAACCAGGTCGCTATGAACCCCCACAACACCGTC 16932 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAATCTGA 349440 || || || ||| | | |||||| | | || || ||| | || || | || Sbjct 16931 TTCGACGCGAAGAGGTTGATTGGTCGCAAGTTCTCCGACGCTGAGGTC----CAGGCCGA 16876 Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGT 349500 | || || || || || | || || | | | | | || || || | |||||||| Sbjct 16875 CATGAAGCACTTCCCCTTCAAGGTCGT-CGAGAGGTC--TGGCAAGCCTGTCATTGAGGT 16819 Query 349501 TGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGT 349560 || | || || || ||| || || || || || || ||||| ||||| || Sbjct 16818 CGAGTTCAAGGGAGAGTCAAAGCAGTTCACTCCTGAGGAGATCTCATCCATGGTCTTGAC 16759 Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTAC 349620 || ||| || | |||||| | || | |||| || || | | ||||| | || Sbjct 16758 CAAGATGCGTGAGACTGCTGAGTCTTACCTTGGTGGCACCGTCAACAACGCTGTCGTCAC 16699 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || || ||||| || || || | |||||| || || || ||||| || |||||| Sbjct 16698 CGTCCCCGCCTACTTCAACGACTCGCAGCGTCAGGCTACCAAGGATGCCGGTCTCATTGC 16639 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || | || || || | || || || || || ||||| || || || || || || || Sbjct 16638 TGGTCTGAACGTCCTCCGTATCATCAACGAGCCTACTGCCGCCGCCATCGCCTACGGTCT 16579 Query 349741 TGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800 ||| || | | || || || | |||||||| ||| | |||||||||||||| Sbjct 16578 TGACAAGAAGGTCGAGGGTGAGCGCAACGTGCTTATTTTCGATCTTGGTGGTGGTACTTT 16519 Query 349801 TGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860 ||||| || || || || |||| ||||| || || || || || | || |||||||| Sbjct 16518 CGATGTGTCGCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACCGCTGGTGA 16459 Query 349861 TACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATT 349920 || || | ||||| || || ||||| || ||| | ||| | || || | || || || Sbjct 16458 CACCCACTTGGGTGGTGAGGACTTTGACAACCGTTTGGTTACTCACTTCGCCAACGAGTT 16399 Query 349921 TAAG 349924 ||| Sbjct 16398 CAAG 16395 >seq3189 Length=50234 Score = 120 bits (132), Expect = 9e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || | ||| || || ||| ||||| || || || || Sbjct 4617 CATGCCACCACGGAGACGAAGGACCAAATGGAGGGTGCTCTCCTTTTGGATGTTGTAGTC 4558 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || |||||||| || || || ||||| || || || Sbjct 4557 GGAAAGGGTCCGACCGTCCTCAAGCTGCTTTCCAGCGAAAATAAGGCGTTGTTGGTCCGG 4498 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | |||||||| || || | ||| || | || Sbjct 4497 AGGAATACCCTCCTTGTCCTGGATCTTCGACTTTACATTGTCGATGGTATCGGAGGACTC 4438 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | |||| ||||| || || || ||||| || ||||||||||| Sbjct 4437 GACCTCCAAGGTAATCGTCTTGCCAGTGAGGGTTTTGACGAAAATCTGCAT 4387 Score = 113 bits (124), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || |||||||| || ||||| || || | Sbjct 4849 TTTGCATACCACCACGCAGACGCAGGACCAAGTGCAGAGTAGATTCCTTTTGGATGTTGT 4790 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || | || |||||||| ||||| || || || || | Sbjct 4789 AGTCGGACAGCGTGCGTCCATCCTCCAACTGCTTTCCAGCGAAGATCAGTCGCTGTTGGT 4730 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || || || || || | ||| ||||| ||||||| || || | Sbjct 4729 CCGGAGGAATACCCTCCTTGTCTTGGATCTTGGATTTAACATTGTCAATCGTGTCTGAAG 4670 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || | ||||| || || | || || || || |||||||| Sbjct 4669 ACTCGACCTCCAACGTGATGGTCTTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 4615 >seq2996 Length=133832 Score = 84.2 bits (92), Expect = 7e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || | || || || || || || || || ||||||||||| Sbjct 18865 TTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATA 18924 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 ||||| || || ||||| |||||||| || || |||||||| || | || ||||| || Sbjct 18925 AGACGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCG 18984 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 |||| || || | || || || | || | ||||| || || || || || || || Sbjct 18985 ATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAA 19043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515170899538703