Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F001675625.1_202016-06-23] 1,787 sequences; 43,625,833 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1545 107 2e-18 >seq1545 Length=8904 Score = 107 bits (118), Expect = 2e-18 Identities = 340/515 (66%), Gaps = 23/515 (4%) Strand=Plus/Plus Query 52561 CGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAA--AGCCA-CTTTTGCC 52617 ||||| |||| || ||||| ||| |||||| | |||||| || || | |||||| Sbjct 7103 CGCAAGAAGGCCGACTGGGCTCTGAGGTGGATC---ACCGACAAGAAGTCAACCTTTGCC 7159 Query 52618 GAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCA 52677 || ||| |||| || ||| | || || ||| | || || ||| |||||| | Sbjct 7160 ACGCGCCTGATCGCTTTCGCTGTCGTCGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCC 7219 Query 52678 ATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGAT 52736 || || | |||| || | ||| | | ||||| || || || || ||||||| | || Sbjct 7220 ATCTTCTGGCTCAAGAAGCGTGGCC-TGATGCCTGGTCTGACTTTCTCCAACGAGCTCAT 7278 Query 52737 ATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTG-TATTATAATACGCGCGTTA 52795 ||||| || || || | ||||| || ||||| ||| | | || | ||| | | Sbjct 7279 CTCGCGTGATGAGGGTCTACACACCGACTTTGCCTGTCTCCTGTTCT----CGCTCCT-- 7332 Query 52796 AAGAAAAATTGTCATATGAAAAAA-TTCTA---GACATGTTTAAAGAGGCCGTCGACATT 52851 ||| || | | | || | || | || || || || || ||| | ||| Sbjct 7333 --GAACAACAGGCCCAACAAGGAGGTTGTGAAGGAGATTGTTGTCGATGCTGTCAAGATT 7390 Query 52852 GAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCGACCATG 52911 || |||||||| ||||||| || || ||| | | ||||||||||||| | | || Sbjct 7391 GAGCAAGAGTTTCTTACGGAGGCGTTGCCCTGCGCCCTCCTGGGCATGAACGCCAACCTG 7450 Query 52912 ATGTGCGAGTACATCGAGTTTGTTGCGGACAGAC-TGTTGATGCAGCTCGGTCAGCCGAA 52970 ||| ||||||| |||||||| || ||||||| | ||| || ||||| | ||| Sbjct 7451 ATGAAGCAGTACATTGAGTTTGTCGCTGACAGACTTCTTGTCGC-CCTCGGAAACGAGAA 7509 Query 52971 ATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAAAAC 53030 ||| ||| ||||| || |||||| | ||||| || |||| ||||| || Sbjct 7510 GGTCTACCGTGCCACCAACCCATTCGATTTTATGGAGAACATCTCACTCGGCGGCAAGAC 7569 Query 53031 AAACTTTTTCGAGAGACGTGTGGGCGAGTACAAAA 53065 ||||| ||||||| ||| || ||||||||| ||| Sbjct 7570 CAACTTCTTCGAGAAACGCGTTGGCGAGTACCAAA 7604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496052919170400