Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F002105295.1_202017-04-21] 1,924 sequences; 38,934,700 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1903 120 3e-22 seq1312 120 3e-22 >seq1903 Length=117364 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||| | || | ||||||||||| || || ||||| || | ||| |||| | Sbjct 76854 ACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCTGCC 76913 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || || || || | ||||||||||| | || | | |||||| Sbjct 76914 GTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGGGGGATACCCTCCTT 76973 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| | | | ||||||||||| ||||| || | ||||| Sbjct 76974 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGAT 77033 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| || ||||| || ||||| ||||| Sbjct 77034 AGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77069 >seq1312 Length=186730 Score = 120 bits (132), Expect = 3e-22 Identities = 146/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| |||||||||||||||| ||| || | | || || |||||||| || || || Sbjct 20126 CTCCTTCTGAATATTGTAATCAGACAGGGTTCTTCCATCCTCCAGCTGCTTGCCCGCAAA 20067 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | || || ||||| | ||| | | ||||||||| ||| | |||| ||||| || Sbjct 20066 GATCAAACGTTGTTGGTCAGGCGGGATACCCTCCTTGTCT-TGAATCTTTGATTTGA-CG 20009 Query 43111 TCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | ||||| ||||| || |||| |||||||||||||| || |||||||| Sbjct 20008 TTGTCGATTGTGTCTGAAGATTCAACTTCGAGTGTGATGGTTTTGCCGGTAAGCGTCTTG 19949 Query 43170 ACAAAGATTTGCAT 43183 || ||||||||||| Sbjct 19948 ACGAAGATTTGCAT 19935 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | |||||||||||||| || ||||| || | || ||||| |||| || Sbjct 19687 ACCAAATGGAGGGTGCTCTCCTTTTGGATGTTGTAGTCGGAAAGGGTCCGACCGTCCTCA 19628 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| |||||||| || || || || ||||| | || | | |||||||||| | Sbjct 19627 AGCTGCTTTCCAGCGAAAATAAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGG 19568 Query 43095 ATTTT 43099 || || Sbjct 19567 ATCTT 19563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571803847786720