Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F002105295.1_202017-04-21] 1,924 sequences; 38,934,700 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1430 109 4e-19 >seq1430 Length=162174 Score = 109 bits (120), Expect = 4e-19 Identities = 267/400 (67%), Gaps = 10/400 (3%) Strand=Plus/Plus Query 30062 ACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30118 ||||||||||| | ||||| |||||||| || || |||| || | ||| ||| Sbjct 29890 ACGTAAAACTGCGCAAACATG---TGGCACGGCGGCAGGACCATAAGCTTGAGGTCCTTG 29946 Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30178 |||||||| || | | | ||||| | ||| | ||||| | | || || |||| Sbjct 29947 GGGTTCCAAGCACTAAGAACCATGCGGCGGTCGTACGGGTTCGTGCGGAGCTTGTGCACG 30006 Query 30179 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 30238 | | ||||| || || ||| |||| ||||||||| ||| ||||| || Sbjct 30007 ACCTCGGCGAGCTGGTCGACGCCCTGGCCCGTGTAGTCTGCGTGGCAGTCGGTGTATTCG 30066 Query 30239 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30298 || || || || | ||| ||||| ||||| || || |||||||| ||| | || | |||| Sbjct 30067 GCGCCAAAGTGGCGCCATTGGAAGCCGTAGACGGGGCCCAGGTCGCCCACCTCGCGGTGC 30126 Query 30299 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC- 30357 | || ||| | ||||| || || | | |||||| ||||||||||||| ||||| Sbjct 30127 TGCAATCCCAGCCCGTCCAGGAACTCACGGCTGCCGTTGCCGTCCCAGATCTTGACCCCG 30186 Query 30358 -CTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCA 30416 | || | || | ||| | | || | || ||||||||||||||||| | Sbjct 30187 GCGTCGCTCAG-GGGCTTCGCCG-ACGTCGCGCCCGACACGAACCACAGCAGCTCGAGGA 30244 Query 30417 CGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 |||||| | | ||||| | ||| ||||| || || || Sbjct 30245 TCACGGCCCGCGAGAAGACGCGCTTCGTCGTCAGCAGAGG 30284 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 29821 CCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGG 29880 |||||| ||| || ||| || || || ||||| | ||| ||||| ||| || | Sbjct 29568 CCTGTTGATCTCGAGCTCGGGGAACGGCCTCGGCTCGCGCTCCAGCTGCGTCCGGAGTGC 29627 Query 29881 TTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTC 29940 || |||| || |||||||||||| || |||| | ||| | | || || | Sbjct 29628 GTCGACGTGGTCGGCGTAGACGTGAGCATCGCCCATGACGTGCGTCAGCGACCCGGGCAC 29687 Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000 ||| || ||| | | || ||||||| ||| || || | ||||||||| ||||| ||||| Sbjct 29688 TAGACCCGTGGCACGCGCAATCATGTGCGTCAGCAGTGCGTAGCTGGCAATGTTGAAGGG 29747 Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 || || || |||||||| | |||| |||||||||||| || Sbjct 29748 CACGCCTAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCA 29789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406300872529008