Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F002105295.1_202017-04-21] 1,924 sequences; 38,934,700 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1312 145 2e-29 seq1903 129 1e-24 seq1441 116 9e-21 >seq1312 Length=186730 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||| || || ||||| ||| | ||||| || ||| || Sbjct 19482 CAGATTTTCGTCAAAACCCTCACTGGCAAGACGATTACCTTGGAGGTCGAGTCCTCCGAT 19541 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || || ||||||||||| ||| Sbjct 19542 ACCATCGACAATGTAAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAACAA 19601 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| ||||| ||||| || || || |||| ||| |||| || ||| || Sbjct 19602 CGCCTTATTTTCGCTGGAAAGCAGCTTGAGGACGGTCGGACCCTTTCCGACTACAACATC 19661 Query 178104 CAAAAAGA 178111 ||||| || Sbjct 19662 CAAAAGGA 19669 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || || || ||||| | ||||| || |||||| Sbjct 19710 CAGATCTTCGTCAAGACTTTGACGGGCAAGACCATCACGTTGGAGGTCGAGTCTTCAGAC 19769 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||| || ||||| || || || ||||||||||| || Sbjct 19770 ACGATTGACAATGTTAAATCCAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAACAG 19829 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| |||||||| ||||| ||| | || |||||| | || || |||| || ||| || Sbjct 19830 CGACTGATCTTCGCTGGAAAGCAGTTGGAGGATGGACGCACGCTGTCCGACTACAACATC 19889 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || ||||| |||| Sbjct 19890 CAAAAGGAATCTACTCTGCA-CTTG 19913 Score = 127 bits (140), Expect = 5e-24 Identities = 132/172 (77%), Gaps = 6/172 (3%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCAGACACCATCGAGAACGTCA 177999 |||| || || || ||||||||||||||||| ||| || |||||||| ||||||| Sbjct 19273 TCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTAGC---GATACCATCGACAACGTCA 19329 Query 178000 AACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCG 178059 | ||||| |||||||| || || |||||||||||||| || || ||||| || |||| Sbjct 19330 AGTCGAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAACAGCGTCTTATTTTTGCCG 19389 Query 178060 GAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 | || || ||||| || || |||| ||| |||| || ||| |||| || || Sbjct 19390 GCAAGCAACTCGAGGACGGTCGGACACTTTCCGACTACAACATCCAGAAGGA 19441 >seq1903 Length=117364 Score = 129 bits (142), Expect = 1e-24 Identities = 144/191 (75%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || ||||| || || ||||| || || || |||||||| |||||||| ||| Sbjct 77066 CAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC--- 77010 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| || ||||| ||||| |||||||| || || ||||| ||||||||| Sbjct 77009 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 76950 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || | ||||| ||||| || ||||| || || || ||||| || |||| || ||| Sbjct 76949 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAAC 76890 Query 178101 GTCCAAAAAGA 178111 |||| || || Sbjct 76889 ATCCAGAAGGA 76879 >seq1441 Length=161736 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 |||||||| ||||| || || || || |||||| | ||||| || ||| ||||| ||| Sbjct 98184 TTCGTGAAGACTCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCCTCGGACACGATC 98125 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || || || |||||||||||||| || ||||| || || ||||| || || ||| Sbjct 98124 GACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAACAGCGTCTT 98065 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||| || || || ||| | || || || | ||||| |||| || ||| |||| || Sbjct 98064 ATCTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTCTCCGACTACAACATCCAGAA 98006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203701526521256