Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F002218345.1_202017-07-14] 2,695 sequences; 39,383,118 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq420 104 2e-17 seq2672 96.9 2e-15 seq1553 93.3 3e-14 seq1290 93.3 3e-14 >seq420 Length=304 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 135 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 76 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 75 GCCGGTATTTAGCCTTA 59 >seq2672 Length=153342 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | |||||||| || |||||||||||||| || ||||| || || Sbjct 55584 CCACCACGGAGACGAAGGACCAAATGGAGGGTGCTCTCCTTTTGGATGTTGTAGTCGGAA 55525 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || ||||| || || || ||||||||||| || | || Sbjct 55524 AGGGTCCGACCGTCCTCAAGCTGCTTTCCAGCGAAAATAAGGCGTTGTTGGTCCGGAGGA 55465 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || |||||| || || ||| ||||| | || ||||| || || Sbjct 55464 ATACCCTCCTTGTCCTGGATCTTCGACTTTACATTGTCGATGGTATCGGAGGACTCGACC 55405 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || ||||| || || || || | |||||| ||||| ||||||||| Sbjct 55404 TCCAAGGTAATCGTCTTGCCAGTGAGGGTTTTGACGAAAATCTGCATG 55357 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | ||| | || ||||| |||||| ||||||||||||||||||| | | | Sbjct 56029 ACGGAGCACAAGGTGCAGAGTCGACTCCTTCTGAATATTGTAATCAGACAGGGTTCTTCC 55970 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | || || || ||||| || | |||||||| || | |||| || || || Sbjct 55969 ATCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGTTGGTCAGGCGGGATACCCTCCTT 55910 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| ||| ||| || || || | || || ||| | ||||||||| | ||| || Sbjct 55909 GTCTTGAATCTTTGATTTGACGTTGTCGATTGTGTCTGAAGATTCAACTTCGAGTGTGAT 55850 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || | || || ||||| || ||||| Sbjct 55849 GGTTTTGCCGGTAAGCGTCTTGACGAAGATTTGCAT 55814 >seq1553 Length=69951 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || ||||| ||| | || || ||||||||||| || || ||||| || || Sbjct 41225 ACCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 41166 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | |||| || | || || |||||||| || | ||| || || || | ||| Sbjct 41165 CAGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGGGG 41106 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTAT--CTCCACTTTCA 38267 || || || |||||| || || ||| ||||| | || || | ||| || || Sbjct 41105 GATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGAC--TCC 41048 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || || | || ||||| || ||||| | ||| || ||||| ||||||||| || Sbjct 41047 ACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGATT 40994 >seq1290 Length=1163 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||| | Sbjct 553 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGTGGTACTTGTTCGCTATCGGTCTCTC 494 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 493 GCCCGTATTTAGCCTT 478 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||| | Sbjct 768 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGTGGTACTTGTTCGCTATCGGTCTCTC 709 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 708 GCCCGTATTTAGCCTT 693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334936198554545