Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F002218345.1_202017-07-14] 2,695 sequences; 39,383,118 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1826 127 2e-24 >seq1826 Length=279799 Score = 127 bits (140), Expect = 2e-24 Identities = 157/213 (74%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 6499 GAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTT 6558 ||||| ||||||||| | ||||| || | |||||| ||||||| |||| ||||| Sbjct 159425 GAGCTCGGGGAACGGCCTCGGCTCGCGCTCCAGCTGCGTCCGGAGTGCGTCGACGTGGTC 159484 Query 6559 CAGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAACCCCACG 6616 ||||| || ||||| |||| |||| || |||| ||| || || | ||| | Sbjct 159485 GGCGTAGACGTGAGCATCGCCCATGACGT--GCGTCAGCGACCCGGGCACTAGACCCGTG 159542 Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || | || ||||||| ||| ||||| ||||| || ||||||||||| ||||| |||| Sbjct 159543 GCACGCGCAATCATGTGCGTCAGCAGTGCGTAGCTGGCAATGTTGAAGGGCACGCCTAGG 159602 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 |||||||| | || || || |||||||||||| Sbjct 159603 CCCATGTCGCAGGACCGCTGGTAGAGCTGGCAG 159635 Score = 127 bits (140), Expect = 2e-24 Identities = 157/213 (74%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||||||||||| || || || | |||||||| |||| ||||| ||||||||||| || Sbjct 159635 CTGCCAGCTCTACCAGCGGTCCTGCGACATGGGCCTAGGCGTGCCCTTCAACATTGCCAG 159576 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755 ||||| ||||| ||| ||||||| || | || | ||| | || || ||| |||| Sbjct 159575 CTACGCACTGCTGACGCACATGATTGCGCGTGCCACGGGTCTAGTGCCCGGGTCGCTGAC 159516 Query 34756 GCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAG 34813 || |||| |||| ||||| || ||||| ||||| |||| ||||||| ||| Sbjct 159515 GC--ACGTCATGGGCGATGCTCACGTCTACGCCGACCACGTCGACGCACTCCGGACGCAG 159458 Query 34814 CTGCAACGAGAGCCCCGACCGTTCCCCCAGCTC 34846 ||| | || ||||| | ||||||||| ||||| Sbjct 159457 CTGGAGCGCGAGCCGAGGCCGTTCCCCGAGCTC 159425 Score = 125 bits (138), Expect = 6e-24 Identities = 279/408 (68%), Gaps = 12/408 (3%) Strand=Plus/Plus Query 6721 ATTCGCGACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGAT 6779 || || |||||| || || ||| | |||||||||| || || |||| || ||| | Sbjct 159728 ATACGAGACGTAAAACTGCGCAAACA-TGTGGCACGGCGGCAGGACCATAAGCTTGAGGT 159786 Query 6780 CCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTG- 6838 |||| |||||||| || | | || || | | ||| | |||||| | | || | Sbjct 159787 CCTTGGGGTTCCAAGCACTAAGAACCATGCGGCGGTCGTACGGGTTCG--TGC--GGAGC 159842 Query 6839 TCGATCACGTACT--GC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCC 6895 | | |||| || || |||||||| | ||||| |||| ||||| || | || | Sbjct 159843 TTGTGCACGACCTCGGCGAGCTGGTCGACGCCCTGGCCCGTGTAGTCTGCGTGGCAGTCG 159902 Query 6896 CGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCC 6955 || || || |||||||| | ||| ||||| |||||||| ||||||| ||||||| || Sbjct 159903 GTGTATTCGGCGCCAAAGTGGCGCCATTGGAAGCCGTAGACGGGGCCCAGGTCGCCCACC 159962 Query 6956 TCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATC 7015 || || | || ||| || |||||| || || || |||| ||||||||||| Sbjct 159963 TCGCGGTGCTGCAATCCCAGCCCGTCCAGGAACTCACGGCTGCCGTTGCCGTCCCAGATC 160022 Query 7016 TTCACCCCCCGGGACG-AGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAG 7074 || | |||| | | || || ||| | ||| || ||| ||||||||||||||| Sbjct 160023 TTGA-CCCCGGCGTCGCTCAGGGGCTTCGCCGACGTCGCGCCCGACACGAACCACAGCAG 160081 Query 7075 CTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 ||| || |||| || | || | || || |||||||||||||| || Sbjct 160082 CTCGAGGATCACGGCCCGCGAGAAGACGCGCTTCGTCGTCAGCAGAGG 160129 Score = 125 bits (138), Expect = 6e-24 Identities = 279/408 (68%), Gaps = 12/408 (3%) Strand=Plus/Minus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 || |||||||||||||| || || | || | || |||| || ||||||||||||||| Sbjct 160129 CCTCTGCTGACGACGAAGCGCGTCTTCTCGCGGGCCGTGATCCTCGAGCTGCTGTGGTTC 160070 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCT-CGTCCCGGGGGGTGAAGATCTGGGACGC 34341 ||| ||| || ||| | ||| || || | | |||| | ||||||||||||| Sbjct 160069 GTGTCGGGCGCGACGTCGGCGAAGCCCCTGAGCGACGCCGGGG-TCAAGATCTGGGACGG 160011 Query 34342 TCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTT 34401 |||| || || || |||||| || ||| || | || |||| ||||||| | Sbjct 160010 CAACGGCAGCCGTGAGTTCCTGGACGGGCTGGGATTGCAGCACCGCGAGGTGGGCGACCT 159951 Query 34402 GGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGC 34461 |||||| |||||||| ||||| ||| | |||||||| || || || | || | || Sbjct 159950 GGGCCCCGTCTACGGCTTCCAATGGCGCCACTTTGGCGCCGAATACACCGACTGCCACGC 159891 Query 34462 GGACTATTCGGGACAGGGAGCGGACCAGCT-GC--AGTACGTGATCGA-CACCTTGAAGC 34517 ||||| |||| ||||| | |||||||| || || |||| | | | || | | Sbjct 159890 AGACTACACGGGCCAGGGCGTCGACCAGCTCGCCGAGGTCGTGCACAAGCTCC--GCA-- 159835 Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGA 34577 |||||| | ||| | | || || | | || |||||||| ||||| ||| || | Sbjct 159834 CGAACCCGTACGACCGCCGCATGGTTCTTAGTGCTTGGAACCCCAAGGACCTCAAGCTTA 159775 Query 34578 TGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTCGCGAAT 34624 ||| || || |||||||||| | ||| || || |||||| || || Sbjct 159774 TGGTCCTGCCGCCGTGCCACA-TGTTTGCGCAGTTTTACGTCTCGTAT 159728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448247299160400