Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F002218355.1_202017-07-14] 2,879 sequences; 39,272,241 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1590 125 5e-23 >seq1590 Length=118394 Score = 125 bits (138), Expect = 5e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| ||||| || || || || || || ||| ||||||| || || Sbjct 20219 ACGAAGACGGAGCACAAGGTGCAGAGTCGACTCCTTCTGAATATTGTAATCAGACAGGGT 20160 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 ||| ||| || || ||||| || ||||| || | ||||||||| ||||| || || || Sbjct 20159 TCTTCCATCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGTTGGTCAGGCGGGATACC 20100 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||||||||||||| |||||| || || || || | | | ||| || Sbjct 20099 CTCCTTGTCTTGAATCTTTGATTTGACGTTGTCGATTGTGTCTGAAGATTCAACTTCGAG 20040 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| ||||| || ||||| ||||| ||||| Sbjct 20039 TGTGATGGTTTTGCCGGTAAGCGTCTTGACGAAGATTTG 20001 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || ||||| ||||||||||| |||||||| |||||||| || |||||||| || |||||| Sbjct 19696 TCCTCAAGCTGCTTTCCAGCGAAAATAAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTG 19637 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| || ||| || || ||||| | | | | | ||| |||||| Sbjct 19636 TCCTGGATCTTCGACTTTACATTGTCGATGGTATCGGAGGACTCGACCTCCAA-GGTAAT 19578 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || || |||||||| || Sbjct 19577 CGTCTTGCCAGTGAGGGTTTTGACGAAAATCTG 19545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268055705721092