Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F002218435.1_202017-07-14] 1,386 sequences; 42,670,599 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1042 143 8e-29 seq356 120 9e-22 seq254 84.2 7e-11 >seq1042 Length=23263 Score = 143 bits (158), Expect = 8e-29 Identities = 432/664 (65%), Gaps = 11/664 (2%) Strand=Plus/Minus Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || ||||| || |||||| ||||||| || || | ||| || || || || || Sbjct 17012 ATTATCGCCAATGACCAGGGTAACCGAACAACCCCGTCCTTCGTGGCGTTCACGGATACC 16953 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| ||||||| ||| | || || || || | ||| || || | || || || Sbjct 16952 GAGCGTCTGATTGGAGATGCGGCCAAGAACCAGGTCGCTATGAACCCCCACAACACCGTC 16893 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAATCTGA 349440 || || || ||| | | |||||| | | || || ||| | || || | || Sbjct 16892 TTCGACGCGAAGAGGTTGATTGGTCGCAAGTTCTCCGACGCTGAGGTC----CAGGCCGA 16837 Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGT 349500 | || || || || || | || || | | | | | || || || | |||||||| Sbjct 16836 CATGAAGCACTTCCCCTTCAAGGTCGT-CGAGAGGTC--TGGCAAGCCTGTCATTGAGGT 16780 Query 349501 TGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGT 349560 || | || || || ||| || || || || || || ||||| ||||| || Sbjct 16779 CGAGTTCAAGGGAGAGTCAAAGCAGTTCACTCCTGAGGAGATCTCATCCATGGTCTTGAC 16720 Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTAC 349620 || ||| || | |||||| | || | |||| || || | | ||||| | || Sbjct 16719 CAAGATGCGTGAGACTGCTGAGTCTTACCTTGGTGGCACCGTCAACAACGCTGTCGTCAC 16660 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || || ||||| || || || | |||||| || || || ||||| || |||||| Sbjct 16659 CGTCCCCGCCTACTTCAACGACTCGCAGCGTCAGGCTACCAAGGATGCCGGTCTCATTGC 16600 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || | || || || | || || || || || ||||| || || || || || || || Sbjct 16599 TGGTCTGAACGTCCTCCGTATCATCAACGAGCCTACTGCCGCCGCCATCGCCTACGGTCT 16540 Query 349741 TGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800 ||| || | | || || || | |||||||| ||| | |||||||||||||| Sbjct 16539 TGACAAGAAGGTCGAGGGTGAGCGCAACGTGCTTATTTTCGATCTTGGTGGTGGTACTTT 16480 Query 349801 TGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860 ||||| || || || || |||| ||||| || || || || || | || |||||||| Sbjct 16479 CGATGTGTCGCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACCGCTGGTGA 16420 Query 349861 TACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATT 349920 || || | ||||| || || ||||| || ||| | ||| | || || | || || || Sbjct 16419 CACCCACTTGGGTGGTGAGGACTTTGACAACCGTTTGGTTACTCACTTCGCCAACGAGTT 16360 Query 349921 TAAG 349924 ||| Sbjct 16359 CAAG 16356 >seq356 Length=53279 Score = 120 bits (132), Expect = 9e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || | ||| || || ||| ||||| || || || || Sbjct 21904 CATGCCACCACGGAGACGAAGGACCAAATGGAGGGTGCTCTCCTTTTGGATGTTGTAGTC 21845 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || |||||||| || || || ||||| || || || Sbjct 21844 GGAAAGGGTCCGACCGTCCTCAAGCTGCTTTCCAGCGAAAATAAGGCGTTGTTGGTCCGG 21785 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | |||||||| || || | ||| || | || Sbjct 21784 AGGAATACCCTCCTTGTCCTGGATCTTCGACTTTACATTGTCGATGGTATCGGAGGACTC 21725 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | |||| ||||| || || || ||||| || ||||||||||| Sbjct 21724 GACCTCCAAGGTAATCGTCTTGCCAGTGAGGGTTTTGACGAAAATCTGCAT 21674 Score = 113 bits (124), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || |||||||| || ||||| || || | Sbjct 22136 TTTGCATACCACCACGCAGACGCAGGACCAAGTGCAGAGTAGATTCCTTTTGGATGTTGT 22077 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || | || |||||||| ||||| || || || || | Sbjct 22076 AGTCGGACAGCGTGCGTCCATCCTCCAACTGCTTTCCAGCGAAGATCAGTCGCTGTTGGT 22017 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || || || || || | ||| ||||| ||||||| || || | Sbjct 22016 CCGGAGGAATACCCTCCTTGTCTTGGATCTTGGATTTAACATTGTCAATCGTGTCTGAAG 21957 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || | ||||| || || | || || || || |||||||| Sbjct 21956 ACTCGACCTCCAACGTGATGGTCTTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 21902 >seq254 Length=61526 Score = 84.2 bits (92), Expect = 7e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || | || || || || || || || || ||||||||||| Sbjct 43110 TTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATA 43051 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 ||||| || || ||||| |||||||| || || |||||||| || | || ||||| || Sbjct 43050 AGACGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCG 42991 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 |||| || || | || || || | || | ||||| || || || || || || || Sbjct 42990 ATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAA 42932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515227491922958