Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F002218435.1_202017-07-14] 1,386 sequences; 42,670,599 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq988 277 2e-69 seq569 109 6e-19 seq798 87.8 2e-12 >seq988 Length=39332 Score = 277 bits (306), Expect = 2e-69 Identities = 530/774 (68%), Gaps = 18/774 (2%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACG 53233 |||| ||| ||| | | ||||||| || || | |||||| |||||| || | Sbjct 30471 GAGAGGCCACAGCACATGATCATGCGTGTTGCTGTAGGTATCTGGGGTGACAACATTGAG 30530 Query 53234 CGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCA 53290 || ||| || || ||| || | ||| ||| || | ||| || |||||| | || Sbjct 30531 CGAGTCATCGAAACCTACAACCTTATGTCTAGCAAA---TTCTTCACACACGCCTCCCCG 30587 Query 53291 ACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATG 53350 || || |||||||| || || || ||||| ||||| ||||||||||| | ||| Sbjct 30588 ACGCTTTTCAACGCCGGCACACCGCAGGCTCAGTTGTCGTCATGCTTCCTGGTTGATATG 30647 Query 53351 AAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAG 53410 ||||| ||| || || || |||||||| || |||||| |||||| ||||||||| Sbjct 30648 AAGGACGACAGCATTGAGGGAATCTACGACACCCTCAAGACTTGTGCCATGATCTCCAAG 30707 Query 53411 TGGTCGGGTGGTATCGGTATCCACTGC--TCGAACGTCCGTGCGAACGGCACACCAATCA 53468 | | || ||||||||| || || | ||| | ||||||| | ||| | ||| Sbjct 30708 ATGGCTGGCGGTATCGGTCTCAACGTCCATCGCA--TCCGTGCCACTGGCTCCTATATCG 30765 Query 53469 AGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGG 53528 || || |||||| | | | || || || || ||||| || || ||||||||||| | Sbjct 30766 CCGGTACCAACGGCACCTCGAACGGCATTGTTCCCATGCTGCGTGTGTTCAACAACACAG 30825 Query 53529 CCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGC 53588 | || |||||| |||||||||| |||||| || | || ||||||||||| |||| Sbjct 30826 CTCGCTACGTCGACCAGGGTGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTTGAGC 30885 Query 53589 CGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGA 53648 |||||||||| || | | ||||| ||||| || | ||| || || | || |||| Sbjct 30886 CGTGGCACGCAGATGTCTTCGAGTTCCTCGACCTAAGGAAGAACCACGGAAAGGAGGAGA 30945 Query 53649 TGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGG 53708 | || |||||||||||| ||||| ||||| || || || |||||| | || | Sbjct 30946 TTCGTGCCCGTGACCTGTTCCTCGCTCTTTGGATCCCTGATCTGTTCATGAAGCGCGTTG 31005 Query 53709 AGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCT 53768 |||| ||| || ||| | |||||||||||||||||||||| |||||| || || Sbjct 31006 AGAAAAACGGCGACTGGACCTTGATGTGCCCGAACGAGTGCCCTGGCCTCGCGGACTGCT 31065 Query 53769 ACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAG---- 53824 ||||||| ||||| | | ||||| || ||| | || || ||||| || | Sbjct 31066 ACGGTGAAGAGTTCGAGGCTCTGTATGAGAAGTATG-AG--CA-GGCCGGTAAGGGTCGC 31121 Query 53825 AAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGA 53884 |||| | ||||||| | | | ||| | | ||||| || ||| ||||| || Sbjct 31122 AAGACGATCAAGGCCCAGAAACTTTGGTACTCCATCCTGGAGGCTCAGACTGAGACTGGT 31181 Query 53885 ACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | |||| |||| ||||||||| |||| |||||||||||||||||| Sbjct 31182 AACCCGTTCATGCTGTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAAC 31235 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 ||||| |||||||| | ||| |||||||||||||| || |||||| |||| | || Sbjct 32067 GCTGACCGTGGTGCCTTCATTGACCAGTCCCAGTCGCTCAACATCCACATGCGCGACCCG 32126 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 | ||| |||| | | ||||||||| || ||| |||||| || |||||||| ||| Sbjct 32127 ACCATGGGCAAGATCACCTCGATGCATTTCACCGGCTGGAAGCTTGGTCTCAAGACCGGT 32186 Query 55907 ATGTACTATCTGCGGAC 55923 |||||||| |||||||| Sbjct 32187 ATGTACTACCTGCGGAC 32203 >seq569 Length=69613 Score = 109 bits (120), Expect = 6e-19 Identities = 296/452 (65%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || |||||||| || || || ||||||||||||| ||| || | || ||| ||||||| | Sbjct 19493 CCAGTACCGATACCGTCGGCGCCGTTGACCAGAACCATGGGAATAACAGGCGCGTAAACC 19434 Query 151936 TCCGGCTCCA---CCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCC 151992 | || || | ||| | || ||||| | | || | || ||||| | ||| Sbjct 19433 TTGGGTTCGATGGCCTTT---CCATCATCGACCTGGTGCTGCAGAACGGGCTCATCAAGG 19377 Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 || | || | || || | | ||| | || ||| || || || | ||||||| Sbjct 19376 GGGTTAAACACACGGCGCGCAAAAGGGGAGAGGCGAGTGTGAATATAACGAGCGCTGGCC 19317 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 ||||| | |||||| || || | ||||| | ||||| || || || ||||| | Sbjct 19316 GCATCGCTACCACCTTGAAGTCGAGAACCAAAGTTGCCAGAAGGTTCCAGACAGTTGACG 19257 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCA 152172 || |||| ||| || | || || || | | | || || ||||||| || ||| Sbjct 19256 TTATTGGAGCCTACATAGTTTTGCGCTAGACCTATGATTGTCTGCTGCAGAGAAGCCTCA 19197 Query 152173 CCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCC 152232 |||||||| || || | || ||| | || |||||| |||| | | |||||| | ||| Sbjct 19196 CCGTGGTGGTAAGCAGCCTTCTCTGAGACGTATCCAGCCAGTTCGACGACCTTCTTATCC 19137 Query 152233 GTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCG 152292 | |||||| | || | |||||| | || ||||| ||||| ||||| | || Sbjct 19136 TTGACCAGGTTTTGTTTAAAGCAGGCGAAGATGACCTTCCGCTGTCCAGGTTTTAGTCCA 19077 Query 152293 TCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 || | || | || || |||||| || |||| Sbjct 19076 TCAATCATGGACGGGATTGAACGCATGTTGTC 19045 Score = 86.0 bits (94), Expect = 7e-12 Identities = 90/117 (77%), Gaps = 6/117 (5%) Strand=Plus/Minus Query 119074 ACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCT---G 119130 |||||| | ||||| ||||| || || |||||||| ||||| || |||| || | Sbjct 17436 ACTGAAAATGTTGGTGAGCTTTGCGCCATATCCGTTACGACCTCC---CACGGTCTTGAG 17380 Query 119131 CTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 ||||| ||||| ||||||||| | |||| ||||| || ||||||||||| ||||| Sbjct 17379 CTCCTTGTCGTCGTAGTTGGAACCCGTCAGGAGGTGACCGAAGATGAGCTCCGGGAT 17323 >seq798 Length=38732 Score = 87.8 bits (96), Expect = 2e-12 Identities = 178/262 (68%), Gaps = 7/262 (3%) Strand=Plus/Plus Query 75009 TCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAAC 75068 ||||||| | | |||| |||| || ||||| ||||| || ||||| ||| | | Sbjct 1857 TCCTTGATGTACGTGTCGATCAGGAGCGAGTAAGTCTCGGAGTGAATGTTCTCCATCATG 1916 Query 75069 GACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATC--CTTTGAAAAATTCA 75126 |||| | ||||||| | || ||||| | |||||| || || | |||| ||| Sbjct 1917 ATCTGGAAGCCGTAGAAGCAACGGGCCTCGGGAATCTGGACTTCGGCGCTGAATCGCTCA 1976 Query 75127 TGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGA 75186 ||| ||||| |||||||||| || || |||||||| || || || | | || Sbjct 1977 A--CGAGGTTCTCGTTGACGATGCCATCAGAAGCGGCGAAGAATGCAAGGATGTGTGAGA 2034 Query 75187 TAAAGTGGCGCTCATCGTCAGTGAGTTTGTC---CCAATCCTTCAGGTCCCCCGCCAAAT 75243 | |||| ||||| || ||||| |||| ||| || | || ||| | ||||| Sbjct 2035 TGAAGTACTTTTCATCATCTGTGAGCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAAAT 2094 Query 75244 CAATCTCCTCGACCGTCCAGAA 75265 ||||||| ||| |||||||||| Sbjct 2095 CAATCTCTTCGGCCGTCCAGAA 2116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547206519482800