Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F002218465.1_202017-07-14] 1,332 sequences; 41,771,944 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1227 96.9 3e-15 seq1287 84.2 2e-11 seq326 84.2 2e-11 >seq1227 Length=54087 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || ||||| |||||||| || | | ||| || |||| ||||||||||| || || || Sbjct 22916 TCCTTTTGGATGTTGTAGTCGGAAAGGGTCCGACCGTCCTCAAGCTGCTTTCCAGCGAAA 22857 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || || || ||||| |||||||| || || || || || || || ||||||| Sbjct 22856 ATAAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTTACATTG 22797 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||||| || || || || | || | |||||||| || | ||||| ||| Sbjct 22796 TCGATGGTATCGGAGGACTCGACCTCCAAGGTAATCGTCTTGCCAGTGAGGGTTTTGACG 22737 Query 64433 AAAATTTGCAT 64443 ||||| ||||| Sbjct 22736 AAAATCTGCAT 22726 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | ||||| || || | ||||| || || ||||| |||||||| | Sbjct 23409 ACCGCCACGAAGACGGAGCACAAGGTGCAGAGTCGACTCCTTCTGAATATTGTAATCAGA 23350 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | || || ||||||||||| ||| | || | || || ||||| || || Sbjct 23349 CAGGGTTCGTCCATCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGTTGGTCAGGCGG 23290 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || ||| || || || | ||| || | || || Sbjct 23289 GATACCCTCCTTGTCTTGAATCTTTGATTTGACGTTGTCGATTGTGTCTGAAGATTCAAC 23230 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||| |||||||| | || || ||||| |||||||| Sbjct 23229 TTCGAGTGTGATGGTTTTGCCGGTAAGCGTCTTGACGAAGATTTGCAT 23182 >seq1287 Length=163115 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || |||||||| || | || ||| | |||| |||||||||||||||||| | Sbjct 122597 TCCTTCTGGATGTTGTAGTCGGAGAGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCAAAG 122656 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | ||||||||||| || || || || || || || || || || ||| ||| Sbjct 122657 ATCAAGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTG 122716 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || | | ||||| || | || | |||||||| || | || || ||| Sbjct 122717 TCGATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACG 122776 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 122777 AAGATCTGCAT 122787 >seq326 Length=132526 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | || || || |||| || ||||||||||| ||| | || Sbjct 18468 TTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATA 18527 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || ||||| ||||| || |||||||| || || || || || || ||| ||| || Sbjct 18528 AGACGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCG 18587 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 | || || || || || || | || | ||||||||| |||| ||| || ||||| Sbjct 18588 ATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAA 18646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499636480914080