Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3 131 1e-25 seq5 123 2e-23 seq7 104 2e-17 >seq3 Length=5051094 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| || | | || | |||| || ||||| || || |||||||| ||| Sbjct 3316088 TACCACCGCGCAAACGAAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 3316029 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||||| |||||||| |||||| | || || |||||||| || |||| Sbjct 3316028 AGAGGGTGCGGCCGTCCTCAAGCTGTTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGAG 3315969 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||||||| || ||| || || | |||| ||||| | |||||| | Sbjct 3315968 GGATACCCTCCTTGTCTTGGATCTTTGACTTGACATTGTCGATCGTGTCGGAGCTCTCAA 3315909 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| || | ||| ||||| |||| || || || |||||||||||| Sbjct 3315908 CCTCGAGAGTGATCGTCTTGCCTGTCAAGGTCTTGACGAAAATCTGCATG 3315859 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||| || ||||||||||| ||||||| ||| || |||||| Sbjct 3316524 ACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTACGACCATCCTCC 3316465 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| ||||||||||| || || || || ||||||||||| | Sbjct 3316464 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGA 3316405 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || || |||||||| | ||| | ||||| Sbjct 3316404 ATCTTGCTCTTCACGTTATCGATGGTATCGCTGGATTCGACCTCCAAGGTAATAGTTTTA 3316345 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || || ||||| Sbjct 3316344 CCCGTCAGGGTCTTGACGAAGATTTGCAT 3316316 Score = 123 bits (136), Expect = 2e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| ||| || ||||| ||| || Sbjct 3315841 CACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTC 3315782 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| |||||||| |||| | ||||||||| || ||||| |||||||||||||| Sbjct 3315781 AAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 3315722 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||| || | |||||||||||||| || | || || Sbjct 3315721 AATCTTCGACTTGACATTGTCGATGGTATCAGAGCTCTCGACCTCGAGAGTGATGGTCTT 3315662 Query 118709 GCCGGTCA 118716 |||||||| Sbjct 3315661 GCCGGTCA 3315654 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||| || || ||||||||||| ||||||| || || |||||| Sbjct 3316296 ACCAAGTGCAGTGTGCTTTCCTTCTGAATGTTGTAGTCGCTCAAGGTTCGGCCGTCCTCG 3316237 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || ||||| |||| |||||||| || || ||||| ||||||||||| ||| Sbjct 3316236 AGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTATCTTGG 3316177 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||||| | |||||| || | || | ||| ||| Sbjct 3316176 ATCTTGCTCTTCACGTTGTCAATCGTGTCTGATGACTCGACTTCCAACGTGATCGTCTTG 3316117 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || || ||||| Sbjct 3316116 CCGGTAAGGGTCTTGACGAAGATTTGCAT 3316088 >seq5 Length=3459663 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || ||||| || || |||||||| ||| | ||||| || Sbjct 1049157 CAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTC 1049098 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| ||||| ||| |||| || |||||||| ||||| || |||||||||||||| Sbjct 1049097 CTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 1049038 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||||| ||| ||||| | ||| | || Sbjct 1049037 CTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGT 1048978 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || || ||||||||||| Sbjct 1048977 CTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 1048945 >seq7 Length=2782040 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || ||||||||||| ||| || || || |||||||||||| || ||||| |||| Sbjct 1279509 TTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 1279450 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 ||||||||||| || ||||| || ||||||||||| || || || || | ||| Sbjct 1279449 AGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1279390 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||| | ||| ||||||| ||| | || ||||| ||||| || || || ||| Sbjct 1279389 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 1279330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829839545352