Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq6 136 8e-27 >seq6 Length=3061052 Score = 136 bits (150), Expect = 8e-27 Identities = 402/612 (66%), Gaps = 11/612 (2%) Strand=Plus/Plus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||| || |||| ||||| |||||||| |||| ||||||||||| || || | Sbjct 2275663 TTCAAGACTTTGGAACGCTCGTACCTCCTCAAGCTTGACGGCAAGATCGTCGAGCGTCCT 2275722 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | ||||| || |||||||| || || |||| ||| |||| | Sbjct 2275723 CAGCACATGATCATGCGTGTTGCTGTCGGCATCTGGGGAGACAACATTGAGCGCGTCATT 2275782 Query 248953 GAGACGTACACCGGAATG-AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAA 249011 |||||||| | | ||| | | | | | | || || || | || || |||||||| Sbjct 2275783 GAGACGTATAACCTCATGTCGAGCAAG-TTCTTCACCCACGCTTCCCCCACACTCTTCAA 2275841 Query 249012 CGCCGGTACCGTCAACAAT--CAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGAC 249069 |||||||| || || | |||||| ||| ||||| || | | |||| | || ||| Sbjct 2275842 TGCCGGTAC--TCCTCAGTCCCAGCTGTCCTCTTGCTTCCTGGTCGACATGAAGGATGAC 2275899 Query 249070 TCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGG 249128 | || || || |||||||| || || || | || | ||| || ||| | || || Sbjct 2275900 AGCATTGATGGTATCTATGACACCCTCAAGACCTGC-GCCATGATCTCCAAAATGGCTGG 2275958 Query 249129 CGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAA 249188 ||| ||||| ||| |||| | |||||| || | ||||| ||||| ||||| || Sbjct 2275959 CGGTATCGGCCTCAACGTCCACCGCATCCGTGCTACTGGTTCCTACATTGCCGGTACCAA 2276018 Query 249189 TGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCAT 249248 || | ||| | || ||| | ||||| ||| | ||| || || | | Sbjct 2276019 CGGAACATCCAACGGTCTGGTCCCCATGCTTCGGGTCTTCAACAACACGGCTAGATATGT 2276078 Query 249249 CAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGC 249305 |||||| || | || || | || ||||| ||| | || ||||| || Sbjct 2276079 TGACCAGGGTGGCAACAAGCGTCCTGGCGCCTTTGCCATCTATCTTGAGCCATGGCATGC 2276138 Query 249306 CGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCG 249365 ||| |||| |||||||| |||||| |||||| ||||||| ||| | | || || Sbjct 2276139 CGACGTATTCGAGTTCCTCGACTTGCGTAAGAACCACGGCAAGGAGGAAGTTCGTGCTCG 2276198 Query 249366 TGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGG 249425 ||| || |||| | ||| ||| || | || |||||||| || ||| || |||| Sbjct 2276199 TGATCTTTTCTTGGCCCTCTGGATCCCAGATCTGTTCATGAAGCGTGTCGAGAAGAACGG 2276258 Query 249426 CGATTGGACGCT 249437 ||| ||||| || Sbjct 2276259 CGACTGGACCCT 2276270 Score = 95.1 bits (104), Expect = 3e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || ||||| || | || |||| ||||| ||||| || ||||| || |||||||| || Sbjct 2486375 CTGCCTCACCTGTTGTTTTACGGACCTCCGGGAACCGGAAAGACATCTACCATCCTCGCC 2486316 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120 || || || | | | ||| | |||||| | || ||||||||||| |||||| Sbjct 2486315 CTTGCTCGCCGCATCTACGGCACTGCCAACATGCGCCAGATGGTGCTCGAGCTCAACGCT 2486256 Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT 254167 || ||||| ||||| | |||||||| || || |||||||||| || Sbjct 2486255 TCCGACGACCGCGGCATCGACGTCGTACGAGAGCAGATCAAGACATT 2486209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073764941691008