Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq5 138 9e-28
seq3 134 1e-26
seq7 104 2e-17
>seq5
Length=3459663
Score = 138 bits (152), Expect = 9e-28
Identities = 160/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||||||||| ||| ||||||||| |||||||||||| || ||| |||| ||
Sbjct 1049153 ACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 1049094
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||||||||| |||| ||||| |||||||| || | ||||||||||||
Sbjct 1049093 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 1049034
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | ||||| | ||||||||| | ||| || |||||
Sbjct 1049033 ATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTA 1048974
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343
||||| || ||||| || || || ||||| ||||||
Sbjct 1048973 CCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCCT 1048938
>seq3
Length=5051094
Score = 134 bits (148), Expect = 1e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || ||||||||||||||||||||||||||| ||| ||| | || |||
Sbjct 3316524 ACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTACGACCATCCTCC 3316465
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| |||| ||||| ||||| || || | ||||||||||||| |
Sbjct 3316464 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGA 3316405
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | || | || ||||||| |||||| || ||
Sbjct 3316404 ATCTTGCTCTTCACGTTATCGATGGTATCGCTGGATTCGACCTCCAAGGTAATAGTTTTA 3316345
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||||||| ||||| || |||||||||||
Sbjct 3316344 CCCGTCAGGGTCTTGACGAAGATTTGCAT 3316316
Score = 118 bits (130), Expect = 8e-22
Identities = 156/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGT 45185
||||||||||| ||||| ||||||||||||||||||||| ||| ||| || |||| |
Sbjct 3316296 ACCAAGTGCAGTGTGCTTTCCTTCTGAATGTTGTAGTCGCTCAAGGTT--CGGCCGTCCT 3316239
Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245
| ||||| || || || || || | ||||||||||| ||||| | |||||||| ||
Sbjct 3316238 CGAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTATCTT 3316179
Query 45246 CAATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304
|| || ||| | || | || | |||| ||| || |||| || ||||||
Sbjct 3316178 GGATCTTGCTCTTCA-CGTTGTCAATCGTGTCTGATGACTCGACTTCCAACGTGATCGTC 3316120
Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||||| || || ||||| || |||||||||||
Sbjct 3316119 TTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 3316088
Score = 102 bits (112), Expect = 6e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193
|| || ||| ||||||||| |||||||||||| || ||| |||| || || |||
Sbjct 3316062 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGT 3316003
Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253
|| || ||||| |||| ||||| ||||| ||||| | |||||||||||| || |||
Sbjct 3316002 TTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTT 3315943
Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313
||| || | | |||| | ||| ||||| | || ||||||||||| |||
Sbjct 3315942 GACTTGACATTGTCGATCGTGTCGGAGCTCTCAACCTCGAGAGTGATCGTCTTGCCTGTC 3315883
Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337
| ||||| || || || ||||||
Sbjct 3315882 AAGGTCTTGACGAAAATCTGCATG 3315859
Score = 86.0 bits (94), Expect = 5e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| |||||||||||| ||| ||| | || || || ||
Sbjct 3315835 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTG 3315776
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
||||| || || ||||| ||||| ||||| ||||| | |||||||||||| ||| ||
Sbjct 3315775 CTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTT 3315716
>seq7
Length=2782040
Score = 104 bits (114), Expect = 2e-17
Identities = 134/184 (73%), Gaps = 6/184 (3%)
Strand=Plus/Minus
Query 45147 CCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203
|||||||||||||||||||| ||| | ||| ||| ||| || || || || || |
Sbjct 1279511 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCG---AGCTGCTTGCCAGCAA 1279455
Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263
| |||| ||||| ||||| ||||| | ||||||||||||| || || ||| ||
Sbjct 1279454 AGATCAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACAT 1279395
Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323
| | | |||| | ||||||||| | ||| || |||||||||||||| |||||||
Sbjct 1279394 TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCA 1279335
Query 45324 CAAA 45327
| ||
Sbjct 1279334 CGAA 1279331
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395074689612226
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |