Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 159 4e-34 seq3 100 4e-16 >seq6 Length=3061052 Score = 159 bits (176), Expect = 4e-34 Identities = 442/670 (66%), Gaps = 16/670 (2%) Strand=Plus/Minus Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 || || |||| || ||||||| | ||| || |||| | || || || ||||| || Sbjct 2276291 GGGCACTCATTGGGGCACATCAGGGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAC 2276232 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 ||||| || ||||| || || | || ||||| | | | | |||||| || || Sbjct 2276231 AGATCTGGGATCCAGAGGGCCAAGAAAAGATCACGAGCACGAACTTCCTCCTTGCCGTGG 2276172 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 ||||| | ||||||||| | | | || | |||||| || || | || ||||| Sbjct 2276171 TTCTTACGCAAGTCGAGGAACTCGAATACGTCGGCATGCCATGGCTCAAGATAGATGGCA 2276112 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | | ||||| || ||||| || ||||| || | |||||||| ||||| || | || Sbjct 2276111 AAGGCGCCAGGACGCTTGTTGCCACCCTGGTCAACATATCTAGCCGTGTTGTTGAAGACC 2276052 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 | | ||| || | | |||||| ||| | || |||||||||| || ||| ||| | Sbjct 2276051 CGAAGCATGGGGACCAGACCGTTGGATGTTCCGTTGGTACCGGCAATGTAGGAACCAGTA 2275992 Query 63522 GCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 ||||| || | |||| | || || || || |||||||| ||||| | |||| Sbjct 2275991 GCACGGATGCGGTGGACGTTGA--GGCCGATACCGCCAGCCATTTTGGAGATCATGGCGC 2275934 Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639 | || | ||||||||||| || || ||||| ||||| |||||| | || || | Sbjct 2275933 AGGTCTTGAGGGTGTCATAGATACCATCAATGCTGTCATCCTTCATGTCGACCAGGAAGC 2275874 Query 63640 AGCTAGACATTTGGTGAC-GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 | |||| ||| ||| ||| ||| || ||||| || | || || |||||||| || Sbjct 2275873 AAGAGGACAGCTGG-GACTGAGGAGTACCGGCATTGAAGAGTGTGGGGGAAGCGTGGGTG 2275815 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGAGTCTATATC-CCATT 63753 || | || || | || || ||||||||||| ||| | | | | || || Sbjct 2275814 AAGAACTTGCTCGACATGAGGTTATACGTCTCAATGACGCGCTCAATGT-TGTCTCCCCA 2275756 Query 63754 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGT 63813 |||| || || || |||||||| | |||||||||||| | || || || ||| || Sbjct 2275755 GATG----CCGACAGCAACACGCATGATCATGTGCTGAGGACGCTCGACGATCTTGCCGT 2275700 Query 63814 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63873 | || | | ||| || ||||||||| || || || || || | || |||| Sbjct 2275699 CAAGCTTGAGGAGGTACGAGCGTTCCAAAGTCTTGAAGCCGAAGTACTGATAGTTGAAGT 2275640 Query 63874 CTCGTTCGTA 63883 | || ||||| Sbjct 2275639 CACGGTCGTA 2275630 >seq3 Length=5051094 Score = 100 bits (110), Expect = 4e-16 Identities = 286/437 (65%), Gaps = 2/437 (0%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || ||||| ||| | || || || ||||| || || || || || ||| || || || Sbjct 937644 TTCTGGTAATCAGCTACCCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTC 937585 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 |||||||| || || || |||| || ||||| || || | | |||| || | | Sbjct 937584 TCCATGAAGTCGAAGGGGTTGGAGACCTTGTAGATCTTCTCATTGCCCAGAGCAACGAGC 937525 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 || | ||| |||||||| || || || ||||||| | | ||||| || | || Sbjct 937524 AAGCGATCCGCGACGAACTCAATGTACTGCTTCATCAGGGTAGAGTTCATGCCGAGAAGA 937465 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 || | ||| |||| | ||||| || || || | || |||| || ||||| Sbjct 937464 GCGCAGGGCAATGCCTCAGTCAAGAATTCCTGCTCGATTGTGACGGCATCGGTGATAATC 937405 Query 33531 AATCTAACG-GTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAA 33589 || | | | ||| || || |||| | || || | || || ||||| Sbjct 937404 TCCTGAATGCGCTGCTTG-CTGGGGCGATGCTTCAGGTGAGAGAAGAGCAGGCAGGCGAA 937346 Query 33590 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCAT 33649 ||| ||| || |||||||| | | || | ||||| || || || || |||||||| Sbjct 937345 GTCGGTGTGGAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCAT 937286 Query 33650 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTC 33709 ||||||||||| || ||||| || || || ||||||| ||| || ||||| || || Sbjct 937285 CAGGCCACGCTTCTTGAGCCAGAAGATTGAGGCGAATGCGCCGCTGAAAAAGATACCCTC 937226 Query 33710 TACTGCAGCAAAGGCAA 33726 || || || ||||||| Sbjct 937225 GACAGCGGCGAAGGCAA 937209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816765491680