Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq6 159 4e-34
seq3 100 4e-16
>seq6
Length=3061052
Score = 159 bits (176), Expect = 4e-34
Identities = 442/670 (66%), Gaps = 16/670 (2%)
Strand=Plus/Minus
Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281
|| || |||| || ||||||| | ||| || |||| | || || || ||||| ||
Sbjct 2276291 GGGCACTCATTGGGGCACATCAGGGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAC 2276232
Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341
||||| || ||||| || || | || ||||| | | | | |||||| || ||
Sbjct 2276231 AGATCTGGGATCCAGAGGGCCAAGAAAAGATCACGAGCACGAACTTCCTCCTTGCCGTGG 2276172
Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401
||||| | ||||||||| | | | || | |||||| || || | || |||||
Sbjct 2276171 TTCTTACGCAAGTCGAGGAACTCGAATACGTCGGCATGCCATGGCTCAAGATAGATGGCA 2276112
Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461
| | ||||| || ||||| || ||||| || | |||||||| ||||| || | ||
Sbjct 2276111 AAGGCGCCAGGACGCTTGTTGCCACCCTGGTCAACATATCTAGCCGTGTTGTTGAAGACC 2276052
Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521
| | ||| || | | |||||| ||| | || |||||||||| || ||| ||| |
Sbjct 2276051 CGAAGCATGGGGACCAGACCGTTGGATGTTCCGTTGGTACCGGCAATGTAGGAACCAGTA 2275992
Query 63522 GCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579
||||| || | |||| | || || || || |||||||| ||||| | ||||
Sbjct 2275991 GCACGGATGCGGTGGACGTTGA--GGCCGATACCGCCAGCCATTTTGGAGATCATGGCGC 2275934
Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639
| || | ||||||||||| || || ||||| ||||| |||||| | || || |
Sbjct 2275933 AGGTCTTGAGGGTGTCATAGATACCATCAATGCTGTCATCCTTCATGTCGACCAGGAAGC 2275874
Query 63640 AGCTAGACATTTGGTGAC-GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698
| |||| ||| ||| ||| ||| || ||||| || | || || |||||||| ||
Sbjct 2275873 AAGAGGACAGCTGG-GACTGAGGAGTACCGGCATTGAAGAGTGTGGGGGAAGCGTGGGTG 2275815
Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGAGTCTATATC-CCATT 63753
|| | || || | || || ||||||||||| ||| | | | | || ||
Sbjct 2275814 AAGAACTTGCTCGACATGAGGTTATACGTCTCAATGACGCGCTCAATGT-TGTCTCCCCA 2275756
Query 63754 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGT 63813
|||| || || || |||||||| | |||||||||||| | || || || ||| ||
Sbjct 2275755 GATG----CCGACAGCAACACGCATGATCATGTGCTGAGGACGCTCGACGATCTTGCCGT 2275700
Query 63814 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63873
| || | | ||| || ||||||||| || || || || || | || ||||
Sbjct 2275699 CAAGCTTGAGGAGGTACGAGCGTTCCAAAGTCTTGAAGCCGAAGTACTGATAGTTGAAGT 2275640
Query 63874 CTCGTTCGTA 63883
| || |||||
Sbjct 2275639 CACGGTCGTA 2275630
>seq3
Length=5051094
Score = 100 bits (110), Expect = 4e-16
Identities = 286/437 (65%), Gaps = 2/437 (0%)
Strand=Plus/Minus
Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350
|| ||||| ||| | || || || ||||| || || || || || ||| || || ||
Sbjct 937644 TTCTGGTAATCAGCTACCCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTC 937585
Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410
|||||||| || || || |||| || ||||| || || | | |||| || | |
Sbjct 937584 TCCATGAAGTCGAAGGGGTTGGAGACCTTGTAGATCTTCTCATTGCCCAGAGCAACGAGC 937525
Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470
|| | ||| |||||||| || || || ||||||| | | ||||| || | ||
Sbjct 937524 AAGCGATCCGCGACGAACTCAATGTACTGCTTCATCAGGGTAGAGTTCATGCCGAGAAGA 937465
Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530
|| | ||| |||| | ||||| || || || | || |||| || |||||
Sbjct 937464 GCGCAGGGCAATGCCTCAGTCAAGAATTCCTGCTCGATTGTGACGGCATCGGTGATAATC 937405
Query 33531 AATCTAACG-GTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAA 33589
|| | | | ||| || || |||| | || || | || || |||||
Sbjct 937404 TCCTGAATGCGCTGCTTG-CTGGGGCGATGCTTCAGGTGAGAGAAGAGCAGGCAGGCGAA 937346
Query 33590 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCAT 33649
||| ||| || |||||||| | | || | ||||| || || || || ||||||||
Sbjct 937345 GTCGGTGTGGAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCAT 937286
Query 33650 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTC 33709
||||||||||| || ||||| || || || ||||||| ||| || ||||| || ||
Sbjct 937285 CAGGCCACGCTTCTTGAGCCAGAAGATTGAGGCGAATGCGCCGCTGAAAAAGATACCCTC 937226
Query 33710 TACTGCAGCAAAGGCAA 33726
|| || || |||||||
Sbjct 937225 GACAGCGGCGAAGGCAA 937209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629816765491680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |