Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 141 1e-28 seq3 118 2e-21 >seq6 Length=3061052 Score = 141 bits (156), Expect = 1e-28 Identities = 431/658 (66%), Gaps = 16/658 (2%) Strand=Plus/Minus Query 79906 GGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATC 79965 || ||||||| | ||| || || | | || || || ||||| || ||||| || ||| Sbjct 2276279 GGGCACATCAGGGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCTGGGATC 2276220 Query 79966 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 80025 || || || | || ||||| | | | | ||||| || || ||||| | Sbjct 2276219 CAGAGGGCCAAGAAAAGATCACGAGCACGAACTTCCTCCTTGCCGTGGTTCTTACGCAAG 2276160 Query 80026 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGT 80085 ||||||||| | | | || | |||||| || || | || ||||| | | || || Sbjct 2276159 TCGAGGAACTCGAATACGTCGGCATGCCATGGCTCAAGATAGATGGCAAAGGCGCCAGGA 2276100 Query 80086 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 80145 || ||||| || ||||| || | |||||||| ||||| || | || | | ||| || Sbjct 2276099 CGCTTGTTGCCACCCTGGTCAACATATCTAGCCGTGTTGTTGAAGACCCGAAGCATGGGG 2276040 Query 80146 ATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 80205 | | ||| |||||||| || ||||| |||| || ||| ||| | ||||| || Sbjct 2276039 ACCAGACCGTTGGATGTTCCGTTGGTACCGGCAATGTAGGAACCAGTAGCACGGATGCGG 2275980 Query 80206 CTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 80263 | |||| | || || || || |||||||| ||||| | ||||| || | | Sbjct 2275979 TGGACGTTGA--GGCCGATACCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGGG 2275922 Query 80264 TATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTT 80323 | |||||||| || || ||||| ||||| |||||| | || || || |||| | Sbjct 2275921 TGTCATAGATACCATCAATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGACAGCT 2275862 Query 80324 GGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 80382 || ||| || ||| || ||||| || | || || |||||||| || || | || Sbjct 2275861 GG-GACTGAGGAGTACCGGCATTGAAGAGTGTGGGGGAAGCGTGGGTGAAGAACTTGCTC 2275803 Query 80383 GACAGTAGATTGTACGTCTCAAT----AGCTGATTCTATATC-CCATTGATGAATTCCTA 80437 |||| || || ||||||||||| ||| | | | | || || |||| || | Sbjct 2275802 GACATGAGGTTATACGTCTCAATGACGCGCTCAATGT-TGTCTCCCCAGATG----CCGA 2275748 Query 80438 CCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACA 80497 | || |||||||| | |||||||||||| | || ||||||||| | | || | | Sbjct 2275747 CAGCAACACGCATGATCATGTGCTGAGGACGCTCGACGATCTTGCCGTCAAGCTTGAGGA 2275688 Query 80498 AGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 80555 ||| || ||||||||| || || || || || | || ||||| || ||||| Sbjct 2275687 GGTACGAGCGTTCCAAAGTCTTGAAGCCGAAGTACTGATAGTTGAAGTCACGGTCGTA 2275630 >seq3 Length=5051094 Score = 118 bits (130), Expect = 2e-21 Identities = 331/502 (66%), Gaps = 7/502 (1%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || ||||| ||| | || || || ||||| || || || || || ||| || || || Sbjct 937644 TTCTGGTAATCAGCTACCCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTC 937585 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 |||||||| || || || |||| || || || || || | | |||| || | | Sbjct 937584 TCCATGAAGTCGAAGGGGTTGGAGACCTTGTAGATCTTCTCATTGCCCAGAGCAACGAGC 937525 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 || | ||||||||| || || || || ||||||| | | ||||| || | ||| Sbjct 937524 AAGCGATCCGCGACGAACTCAATGTACTGCTTCATCAGGGTAGAGTTCATGCCGAGAAGA 937465 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 || | ||| |||| | ||||| || || || | || ||||| || ||||| Sbjct 937464 GCGCAGGGCAATGCCTCAGTCAAGAATTCCTGCTCGATTGTGACGGCATCGGTGATAATC 937405 Query 49909 GATCTAACG-GTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 49967 || | | | ||| || || ||||| | || || | || || ||||| Sbjct 937404 TCCTGAATGCGCTGCTTG-CTGGGGCGATGCTTCAGGTGAGAGAAGAGCAGGCAGGCGAA 937346 Query 49968 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 50027 ||| ||| || |||||||| | | || || |||||||| || || || |||||||| Sbjct 937345 GTCGGTGTGGAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCAT 937286 Query 50028 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTC 50087 ||||||||||| || ||||| || || || || |||| || || ||||| || || Sbjct 937285 CAGGCCACGCTTCTTGAGCCAGAAGATTGAGGCGAATGCGCCGCTGAAAAAGATACCCTC 937226 Query 50088 TACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCA-CT 50143 || ||||| |||||||| || | || | || || | | || || ||||| | Sbjct 937225 GACAGCGGCGAAGGCAACCAGGCGCTGAGCGAAAGAGGAGTCCTTATCCTGGATCCATCG 937166 Query 50144 TTTGAGCCCAATCGGCCTTCTT 50165 || ||||||||||||||||| Sbjct 937165 GATG-GCCCAATCGGCCTTCTT 937145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267848293840