Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq6 141 1e-28
seq3 118 2e-21
>seq6
Length=3061052
Score = 141 bits (156), Expect = 1e-28
Identities = 431/658 (66%), Gaps = 16/658 (2%)
Strand=Plus/Minus
Query 79906 GGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATC 79965
|| ||||||| | ||| || || | | || || || ||||| || ||||| || |||
Sbjct 2276279 GGGCACATCAGGGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCTGGGATC 2276220
Query 79966 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 80025
|| || || | || ||||| | | | | ||||| || || ||||| |
Sbjct 2276219 CAGAGGGCCAAGAAAAGATCACGAGCACGAACTTCCTCCTTGCCGTGGTTCTTACGCAAG 2276160
Query 80026 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGT 80085
||||||||| | | | || | |||||| || || | || ||||| | | || ||
Sbjct 2276159 TCGAGGAACTCGAATACGTCGGCATGCCATGGCTCAAGATAGATGGCAAAGGCGCCAGGA 2276100
Query 80086 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 80145
|| ||||| || ||||| || | |||||||| ||||| || | || | | ||| ||
Sbjct 2276099 CGCTTGTTGCCACCCTGGTCAACATATCTAGCCGTGTTGTTGAAGACCCGAAGCATGGGG 2276040
Query 80146 ATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 80205
| | ||| |||||||| || ||||| |||| || ||| ||| | ||||| ||
Sbjct 2276039 ACCAGACCGTTGGATGTTCCGTTGGTACCGGCAATGTAGGAACCAGTAGCACGGATGCGG 2275980
Query 80206 CTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 80263
| |||| | || || || || |||||||| ||||| | ||||| || | |
Sbjct 2275979 TGGACGTTGA--GGCCGATACCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGGG 2275922
Query 80264 TATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTT 80323
| |||||||| || || ||||| ||||| |||||| | || || || |||| |
Sbjct 2275921 TGTCATAGATACCATCAATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGACAGCT 2275862
Query 80324 GGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 80382
|| ||| || ||| || ||||| || | || || |||||||| || || | ||
Sbjct 2275861 GG-GACTGAGGAGTACCGGCATTGAAGAGTGTGGGGGAAGCGTGGGTGAAGAACTTGCTC 2275803
Query 80383 GACAGTAGATTGTACGTCTCAAT----AGCTGATTCTATATC-CCATTGATGAATTCCTA 80437
|||| || || ||||||||||| ||| | | | | || || |||| || |
Sbjct 2275802 GACATGAGGTTATACGTCTCAATGACGCGCTCAATGT-TGTCTCCCCAGATG----CCGA 2275748
Query 80438 CCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACA 80497
| || |||||||| | |||||||||||| | || ||||||||| | | || | |
Sbjct 2275747 CAGCAACACGCATGATCATGTGCTGAGGACGCTCGACGATCTTGCCGTCAAGCTTGAGGA 2275688
Query 80498 AGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 80555
||| || ||||||||| || || || || || | || ||||| || |||||
Sbjct 2275687 GGTACGAGCGTTCCAAAGTCTTGAAGCCGAAGTACTGATAGTTGAAGTCACGGTCGTA 2275630
>seq3
Length=5051094
Score = 118 bits (130), Expect = 2e-21
Identities = 331/502 (66%), Gaps = 7/502 (1%)
Strand=Plus/Minus
Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728
|| ||||| ||| | || || || ||||| || || || || || ||| || || ||
Sbjct 937644 TTCTGGTAATCAGCTACCCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTC 937585
Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788
|||||||| || || || |||| || || || || || | | |||| || | |
Sbjct 937584 TCCATGAAGTCGAAGGGGTTGGAGACCTTGTAGATCTTCTCATTGCCCAGAGCAACGAGC 937525
Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848
|| | ||||||||| || || || || ||||||| | | ||||| || | |||
Sbjct 937524 AAGCGATCCGCGACGAACTCAATGTACTGCTTCATCAGGGTAGAGTTCATGCCGAGAAGA 937465
Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908
|| | ||| |||| | ||||| || || || | || ||||| || |||||
Sbjct 937464 GCGCAGGGCAATGCCTCAGTCAAGAATTCCTGCTCGATTGTGACGGCATCGGTGATAATC 937405
Query 49909 GATCTAACG-GTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 49967
|| | | | ||| || || ||||| | || || | || || |||||
Sbjct 937404 TCCTGAATGCGCTGCTTG-CTGGGGCGATGCTTCAGGTGAGAGAAGAGCAGGCAGGCGAA 937346
Query 49968 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 50027
||| ||| || |||||||| | | || || |||||||| || || || ||||||||
Sbjct 937345 GTCGGTGTGGAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCAT 937286
Query 50028 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTC 50087
||||||||||| || ||||| || || || || |||| || || ||||| || ||
Sbjct 937285 CAGGCCACGCTTCTTGAGCCAGAAGATTGAGGCGAATGCGCCGCTGAAAAAGATACCCTC 937226
Query 50088 TACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCA-CT 50143
|| ||||| |||||||| || | || | || || | | || || ||||| |
Sbjct 937225 GACAGCGGCGAAGGCAACCAGGCGCTGAGCGAAAGAGGAGTCCTTATCCTGGATCCATCG 937166
Query 50144 TTTGAGCCCAATCGGCCTTCTT 50165
|| |||||||||||||||||
Sbjct 937165 GATG-GCCCAATCGGCCTTCTT 937145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718267848293840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |