Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq6 152 8e-32
seq3 114 2e-20
>seq6
Length=3061052
Score = 152 bits (168), Expect = 8e-32
Identities = 334/495 (67%), Gaps = 4/495 (1%)
Strand=Plus/Plus
Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924
|||| ||| ||||| ||||| || || || ||||| | ||| |||| | || || |
Sbjct 2276072 GATATGTTGACCAGGGTGGCAACAAGCGTCCTGGCGCCTTTGCCATCTATCTTGAGCCAT 2276131
Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984
|||| || ||||| || || || |||| |||| || ||| ||| || || | |
Sbjct 2276132 GGCATGCCGACGTATTCGAGTTCCTCGACTTGCGTAAGAACCACGGCAAGGAGGAAGTTC 2276191
Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044
| || | || | || | || |||||| | |||||| ||||||||||||| ||| |
Sbjct 2276192 GTGCTCGTGATCTTTTCTTGGCCCTCTGGATCCCAGATCTGTTCATGAAGCGTGTCGAGA 2276251
Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104
| ||| |||||| ||| ||||||||| | || || |||||| |||| |||| |
Sbjct 2276252 AGAACGGCGACTGGACCCTGATGTGCCCCAATGAGTGCCCAGGTCTGGCCGACTGCTACG 2276311
Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGA 97163
|||| |||||||||||| ||| | |||||| ||||| || || |||| |
Sbjct 2276312 GCGAGGAGTTTGAGGCCTTGTATGAGAAGTACGAGAGCGAGGGTCGCGGCCGCAAGACCA 2276371
Query 97164 GTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222
|| | || | |||| |||||| | | || | ||| ||| ||||| || | ||
Sbjct 2276372 -TCAAGGC-CCAGAAGCTGTGGTACTCTATTCTCGAGGCCCAGACTGAGACCGGTAACCC 2276429
Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282
| ||| |||||||||||| | || ||||| |||||||| || | || || ||
Sbjct 2276430 CTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTCGGAACAAT 2276489
Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGT 97342
| | ||||| || ||||| || || | |||||| | | || |||||| ||| ||
Sbjct 2276490 CCGAAGTTCCAACCTCTGCACCGAGATCATCGAGTACTGCGCCCCTGACGAGGTGGCCGT 2276549
Query 97343 TTGCGTTCTGGCATC 97357
|||| ||||| ||
Sbjct 2276550 TTGCAACCTGGCTTC 2276564
>seq3
Length=5051094
Score = 114 bits (126), Expect = 2e-20
Identities = 185/266 (70%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| ||||| |||| ||||| ||||| | ||| ||| |||||||
Sbjct 936735 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATCGATCTC 936794
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
||||||||||| |||| ||| | | ||| | | || |||| | || | ||
Sbjct 936795 TCCAAGGACCTTCACGACTGGAACAACCGTCTCAACGATGATGAGAAGTACTTCGTCTCT 936854
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198
||||| |||| ||||| || | ||| ||||| || ||||| || || ||| | |||
Sbjct 936855 CACATCCTGGCTTTCTTCGCTGCCTCGGATGGCATTGTCAATGAGAACCTGGTCGAGCGA 936914
Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258
||| ||| | || || |||| ||||| ||||| ||||| ||||||||
Sbjct 936915 TTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGTTGCTTCTACGGCTTCCAGATCATGATG 936974
Query 125259 GAGAACGTGCACTCGGAAATGTACTC 125284
|||||| | ||||| || | |||||
Sbjct 936975 GAGAACATCCACTCCGAGACCTACTC 937000
Score = 104 bits (114), Expect = 3e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 125344 TCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACG 125403
||| ||| || || | || || || ||||| | |||| || || |||||| | ||
Sbjct 937122 TCGTCACAGTCCCTTGCATTCGCAAGAAGGCCGATTGGGCCATCCGATGGATCCAGGATA 937181
Query 125404 ACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463
| | || || | ||| | | ||||| || |||||||| || ||||| ||||| ||
Sbjct 937182 AGGACTCCTCTTTCGCTCAGCGCCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTTTTCA 937241
Query 125464 CGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGC 125523
|| || || | ||||| |||||||||||||| || || |||||||| |||||
Sbjct 937242 GCGGCGCATTCGCCTCAATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCCGGTCTGACCT 937301
Query 125524 ACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573
| |||||| | || ||||| ||||||||||| ||| ||||| |||
Sbjct 937302 TCTCCAACGAGCTCATCTCTCGTGACGAGGGCCTCCACACCGACTTCGCC 937351
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058218096560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |