Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 152 8e-32 seq3 114 2e-20 >seq6 Length=3061052 Score = 152 bits (168), Expect = 8e-32 Identities = 334/495 (67%), Gaps = 4/495 (1%) Strand=Plus/Plus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||| ||| ||||| ||||| || || || ||||| | ||| |||| | || || | Sbjct 2276072 GATATGTTGACCAGGGTGGCAACAAGCGTCCTGGCGCCTTTGCCATCTATCTTGAGCCAT 2276131 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 |||| || ||||| || || || |||| |||| || ||| ||| || || | | Sbjct 2276132 GGCATGCCGACGTATTCGAGTTCCTCGACTTGCGTAAGAACCACGGCAAGGAGGAAGTTC 2276191 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | || | || | || | || |||||| | |||||| ||||||||||||| ||| | Sbjct 2276192 GTGCTCGTGATCTTTTCTTGGCCCTCTGGATCCCAGATCTGTTCATGAAGCGTGTCGAGA 2276251 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 | ||| |||||| ||| ||||||||| | || || |||||| |||| |||| | Sbjct 2276252 AGAACGGCGACTGGACCCTGATGTGCCCCAATGAGTGCCCAGGTCTGGCCGACTGCTACG 2276311 Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGA 97163 |||| |||||||||||| ||| | |||||| ||||| || || |||| | Sbjct 2276312 GCGAGGAGTTTGAGGCCTTGTATGAGAAGTACGAGAGCGAGGGTCGCGGCCGCAAGACCA 2276371 Query 97164 GTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 || | || | |||| |||||| | | || | ||| ||| ||||| || | || Sbjct 2276372 -TCAAGGC-CCAGAAGCTGTGGTACTCTATTCTCGAGGCCCAGACTGAGACCGGTAACCC 2276429 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 | ||| |||||||||||| | || ||||| |||||||| || | || || || Sbjct 2276430 CTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTCGGAACAAT 2276489 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGT 97342 | | ||||| || ||||| || || | |||||| | | || |||||| ||| || Sbjct 2276490 CCGAAGTTCCAACCTCTGCACCGAGATCATCGAGTACTGCGCCCCTGACGAGGTGGCCGT 2276549 Query 97343 TTGCGTTCTGGCATC 97357 |||| ||||| || Sbjct 2276550 TTGCAACCTGGCTTC 2276564 >seq3 Length=5051094 Score = 114 bits (126), Expect = 2e-20 Identities = 185/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| ||||| ||||| | ||| ||| ||||||| Sbjct 936735 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATCGATCTC 936794 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| |||| ||| | | ||| | | || |||| | || | || Sbjct 936795 TCCAAGGACCTTCACGACTGGAACAACCGTCTCAACGATGATGAGAAGTACTTCGTCTCT 936854 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||||| |||| ||||| || | ||| ||||| || ||||| || || ||| | ||| Sbjct 936855 CACATCCTGGCTTTCTTCGCTGCCTCGGATGGCATTGTCAATGAGAACCTGGTCGAGCGA 936914 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 ||| ||| | || || |||| ||||| ||||| ||||| |||||||| Sbjct 936915 TTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGTTGCTTCTACGGCTTCCAGATCATGATG 936974 Query 125259 GAGAACGTGCACTCGGAAATGTACTC 125284 |||||| | ||||| || | ||||| Sbjct 936975 GAGAACATCCACTCCGAGACCTACTC 937000 Score = 104 bits (114), Expect = 3e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 125344 TCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACG 125403 ||| ||| || || | || || || ||||| | |||| || || |||||| | || Sbjct 937122 TCGTCACAGTCCCTTGCATTCGCAAGAAGGCCGATTGGGCCATCCGATGGATCCAGGATA 937181 Query 125404 ACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 | | || || | ||| | | ||||| || |||||||| || ||||| ||||| || Sbjct 937182 AGGACTCCTCTTTCGCTCAGCGCCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTTTTCA 937241 Query 125464 CGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGC 125523 || || || | ||||| |||||||||||||| || || |||||||| ||||| Sbjct 937242 GCGGCGCATTCGCCTCAATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCCGGTCTGACCT 937301 Query 125524 ACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 | |||||| | || ||||| ||||||||||| ||| ||||| ||| Sbjct 937302 TCTCCAACGAGCTCATCTCTCGTGACGAGGGCCTCCACACCGACTTCGCC 937351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058218096560