Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq3 109 1e-18
>seq3
Length=5051094
Score = 109 bits (120), Expect = 1e-18
Identities = 141/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| |||||||| || ||||| | ||| | ||| || || || || || ||||| ||
Sbjct 3316506 TCCTTCTGAATGTTGTAGTCGCTCAAAGTACGACCATCCTCCAGCTGCTTACCAGCGAAG 3316447
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATT 104487
|| || | ||| || ||||| || || || || || ||||||||| ||||| || || ||
Sbjct 3316446 ATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGAATC-TTGCTCTTCACGTT 3316388
Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547
|| | ||||||||| | ||| ||||| | |||||||| ||||| || || || || ||
Sbjct 3316387 ATCGATGGTATCGCTGGATTCGACCTCCAAGGTAATAGTTTTACCCGTCAGGGTCTTGAC 3316328
Query 104548 AAATATCTGCAT 104559
|| || |||||
Sbjct 3316327 GAAGATTTGCAT 3316316
Score = 100 bits (110), Expect = 7e-16
Identities = 148/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || |||| || | ||| || || || | || || || ||||| || || |||||
Sbjct 3315861 ATGCCACCTCGGAGGCGAAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 3315802
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || ||||| || || ||||||||||| || | | ||| || ||||||
Sbjct 3315801 GACAGGGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGA 3315742
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508
|| || || || || ||||||||||| | || ||||| || | |||||| || | ||
Sbjct 3315741 GGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATC-AGAGCTCTC 3315683
Query 104509 TACCTCTAGTGTAATAGTCTTACCAGT 104535
||||| || || || ||||| || ||
Sbjct 3315682 GACCTCGAGAGTGATGGTCTTGCCGGT 3315656
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151396836257048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |