Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 116 6e-22 >seq1 Length=6530789 Score = 116 bits (128), Expect = 6e-22 Identities = 88/101 (87%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||||||||| ||||| ||||| ||||| Sbjct 2707513 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAAGGTATCACGAAGCCCGCTAT 2707455 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||||||||| ||||||||||| || ||||||||| |||||| Sbjct 2707454 CCGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 2707414 Score = 98.7 bits (108), Expect = 2e-16 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | ||| |||||| || |||||||| || ||||||||||| || || Sbjct 5712198 GCCAAGCGCCACCGAAAGAT-TCTTCGCGACAACATCCAGGGTATCACCAAGCCCGCCAT 5712140 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| || ||||||||||| ||||||||| |||||| Sbjct 5712139 CCGACGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTCTG 5712099 Score = 89.7 bits (98), Expect = 8e-14 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| |||| |||| | |||| ||||||| || || |||| || | Sbjct 2707356 TGATCTACGAAGAGACCCGTGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGCGACG 2707297 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || | ||||| || || ||| | || ||||||| | Sbjct 2707296 CGGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTTACTTCCCTTGACGTCGTCTACG 2707237 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| || || ||||||| | || ||||| || ||||| Sbjct 2707236 CCCTGAAGCGCCAGGGCCGTACCCTCTACGGTTTCGGTGGTTAA 2707193 Score = 84.2 bits (92), Expect = 3e-12 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| ||| | |||| |||||| || || |||| ||| | Sbjct 5712039 TGATCTACGAGGAGACCCGTGGTGTCCTCAAGACATTCCTCGAGGGTGTCATCCGTGACG 5711980 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || || ||||||||||| || || ||||| |||||||| | || | ||||||| Sbjct 5711979 CCGTCACATACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTCGACGTTGTCTATG 5711920 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| || || ||||| | | |||||||| || ||||| Sbjct 5711919 CCCTGAAGCGACAGGGCCGCACCCTGTATGGTTTCGGTGGTTAA 5711876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075103083458