Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq6 168 8e-37
seq3 118 1e-21
>seq6
Length=3061052
Score = 168 bits (186), Expect = 8e-37
Identities = 446/673 (66%), Gaps = 16/673 (2%)
Strand=Plus/Minus
Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227
|| || || |||| || ||||||| | ||| || |||| | || || || |||||
Sbjct 2276294 CCTGGGCACTCATTGGGGCACATCAGGGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 2276235
Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287
|| ||||| || ||||| || || | || ||||| | | | | |||||| || ||
Sbjct 2276234 AACAGATCTGGGATCCAGAGGGCCAAGAAAAGATCACGAGCACGAACTTCCTCCTTGCCG 2276175
Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347
||||| | ||||||||| | | | || | |||||| || || | || |||
Sbjct 2276174 TGGTTCTTACGCAAGTCGAGGAACTCGAATACGTCGGCATGCCATGGCTCAAGATAGATG 2276115
Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407
|| | | ||||| || ||||| || ||||| || | |||||||| ||||| || |
Sbjct 2276114 GCAAAGGCGCCAGGACGCTTGTTGCCACCCTGGTCAACATATCTAGCCGTGTTGTTGAAG 2276055
Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467
|| | | ||| || | | |||||| ||| | || |||||||||| || ||| |||
Sbjct 2276054 ACCCGAAGCATGGGGACCAGACCGTTGGATGTTCCGTTGGTACCGGCAATGTAGGAACCA 2275995
Query 63468 CTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525
| ||||| || | |||| | || || || || |||||||| ||||| | |
Sbjct 2275994 GTAGCACGGATGCGGTGGACGTTGA--GGCCGATACCGCCAGCCATTTTGGAGATCATGG 2275937
Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585
|||| || | |||||||||||||| || ||||| ||||| |||||| | || |
Sbjct 2275936 CGCAGGTCTTGAGGGTGTCATAGATACCATCAATGCTGTCATCCTTCATGTCGACCAGGA 2275877
Query 63586 AACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63644
| || |||| ||| ||| || ||| || ||||| || | || || ||||||||
Sbjct 2275876 AGCAAGAGGACAGCTGG-GACTGAGGAGTACCGGCATTGAAGAGTGTGGGGGAAGCGTGG 2275818
Query 63645 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGAGTCTATATC-CC 63699
|| || | || || | || || ||||||||||| ||| | | | | || ||
Sbjct 2275817 GTGAAGAACTTGCTCGACATGAGGTTATACGTCTCAATGACGCGCTCAATGT-TGTCTCC 2275759
Query 63700 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63759
|||| || || || |||||||| | |||||||||||| | || |||||||||
Sbjct 2275758 CCAGATG----CCGACAGCAACACGCATGATCATGTGCTGAGGACGCTCGACGATCTTGC 2275703
Query 63760 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63819
|| | || | | ||| || ||||||||| || || || || || | || |
Sbjct 2275702 CGTCAAGCTTGAGGAGGTACGAGCGTTCCAAAGTCTTGAAGCCGAAGTACTGATAGTTGA 2275643
Query 63820 AGTCTCGTTCGTA 63832
|||| || |||||
Sbjct 2275642 AGTCACGGTCGTA 2275630
>seq3
Length=5051094
Score = 118 bits (130), Expect = 1e-21
Identities = 290/437 (66%), Gaps = 2/437 (0%)
Strand=Plus/Minus
Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072
|| ||||| ||| | || || || ||||| || || || || || ||| || || ||
Sbjct 937644 TTCTGGTAATCAGCTACCCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTC 937585
Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132
|||||||| || || || |||| || || || || || | | |||| || | |
Sbjct 937584 TCCATGAAGTCGAAGGGGTTGGAGACCTTGTAGATCTTCTCATTGCCCAGAGCAACGAGC 937525
Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192
|| | |||||||||||| || || || ||||||| | | ||||| || | |||
Sbjct 937524 AAGCGATCCGCGACGAACTCAATGTACTGCTTCATCAGGGTAGAGTTCATGCCGAGAAGA 937465
Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252
|| | ||| |||| | ||||| || || || | || ||||| || |||||
Sbjct 937464 GCGCAGGGCAATGCCTCAGTCAAGAATTCCTGCTCGATTGTGACGGCATCGGTGATAATC 937405
Query 33253 GATCTAACG-GTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 33311
|| | | | ||| || || ||||| | || || | || || |||||
Sbjct 937404 TCCTGAATGCGCTGCTTG-CTGGGGCGATGCTTCAGGTGAGAGAAGAGCAGGCAGGCGAA 937346
Query 33312 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 33371
||| ||| || |||||||| | | || || |||||||| || || || ||||||||
Sbjct 937345 GTCGGTGTGGAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCAT 937286
Query 33372 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTC 33431
||||||||||| || ||||| || || || ||||||| || || ||||| || ||
Sbjct 937285 CAGGCCACGCTTCTTGAGCCAGAAGATTGAGGCGAATGCGCCGCTGAAAAAGATACCCTC 937226
Query 33432 TACTGCAGCAAAGGCAA 33448
|| || || |||||||
Sbjct 937225 GACAGCGGCGAAGGCAA 937209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622946374594960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |