Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6 168 8e-37 seq3 118 1e-21 >seq6 Length=3061052 Score = 168 bits (186), Expect = 8e-37 Identities = 446/673 (66%), Gaps = 16/673 (2%) Strand=Plus/Minus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 || || || |||| || ||||||| | ||| || |||| | || || || ||||| Sbjct 2276294 CCTGGGCACTCATTGGGGCACATCAGGGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 2276235 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 || ||||| || ||||| || || | || ||||| | | | | |||||| || || Sbjct 2276234 AACAGATCTGGGATCCAGAGGGCCAAGAAAAGATCACGAGCACGAACTTCCTCCTTGCCG 2276175 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| | ||||||||| | | | || | |||||| || || | || ||| Sbjct 2276174 TGGTTCTTACGCAAGTCGAGGAACTCGAATACGTCGGCATGCCATGGCTCAAGATAGATG 2276115 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | ||||| || ||||| || ||||| || | |||||||| ||||| || | Sbjct 2276114 GCAAAGGCGCCAGGACGCTTGTTGCCACCCTGGTCAACATATCTAGCCGTGTTGTTGAAG 2276055 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || | | ||| || | | |||||| ||| | || |||||||||| || ||| ||| Sbjct 2276054 ACCCGAAGCATGGGGACCAGACCGTTGGATGTTCCGTTGGTACCGGCAATGTAGGAACCA 2275995 Query 63468 CTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 | ||||| || | |||| | || || || || |||||||| ||||| | | Sbjct 2275994 GTAGCACGGATGCGGTGGACGTTGA--GGCCGATACCGCCAGCCATTTTGGAGATCATGG 2275937 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 |||| || | |||||||||||||| || ||||| ||||| |||||| | || | Sbjct 2275936 CGCAGGTCTTGAGGGTGTCATAGATACCATCAATGCTGTCATCCTTCATGTCGACCAGGA 2275877 Query 63586 AACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63644 | || |||| ||| ||| || ||| || ||||| || | || || |||||||| Sbjct 2275876 AGCAAGAGGACAGCTGG-GACTGAGGAGTACCGGCATTGAAGAGTGTGGGGGAAGCGTGG 2275818 Query 63645 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGAGTCTATATC-CC 63699 || || | || || | || || ||||||||||| ||| | | | | || || Sbjct 2275817 GTGAAGAACTTGCTCGACATGAGGTTATACGTCTCAATGACGCGCTCAATGT-TGTCTCC 2275759 Query 63700 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63759 |||| || || || |||||||| | |||||||||||| | || ||||||||| Sbjct 2275758 CCAGATG----CCGACAGCAACACGCATGATCATGTGCTGAGGACGCTCGACGATCTTGC 2275703 Query 63760 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63819 || | || | | ||| || ||||||||| || || || || || | || | Sbjct 2275702 CGTCAAGCTTGAGGAGGTACGAGCGTTCCAAAGTCTTGAAGCCGAAGTACTGATAGTTGA 2275643 Query 63820 AGTCTCGTTCGTA 63832 |||| || ||||| Sbjct 2275642 AGTCACGGTCGTA 2275630 >seq3 Length=5051094 Score = 118 bits (130), Expect = 1e-21 Identities = 290/437 (66%), Gaps = 2/437 (0%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || ||||| ||| | || || || ||||| || || || || || ||| || || || Sbjct 937644 TTCTGGTAATCAGCTACCCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTC 937585 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 |||||||| || || || |||| || || || || || | | |||| || | | Sbjct 937584 TCCATGAAGTCGAAGGGGTTGGAGACCTTGTAGATCTTCTCATTGCCCAGAGCAACGAGC 937525 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 || | |||||||||||| || || || ||||||| | | ||||| || | ||| Sbjct 937524 AAGCGATCCGCGACGAACTCAATGTACTGCTTCATCAGGGTAGAGTTCATGCCGAGAAGA 937465 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 || | ||| |||| | ||||| || || || | || ||||| || ||||| Sbjct 937464 GCGCAGGGCAATGCCTCAGTCAAGAATTCCTGCTCGATTGTGACGGCATCGGTGATAATC 937405 Query 33253 GATCTAACG-GTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 33311 || | | | ||| || || ||||| | || || | || || ||||| Sbjct 937404 TCCTGAATGCGCTGCTTG-CTGGGGCGATGCTTCAGGTGAGAGAAGAGCAGGCAGGCGAA 937346 Query 33312 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 33371 ||| ||| || |||||||| | | || || |||||||| || || || |||||||| Sbjct 937345 GTCGGTGTGGAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCAT 937286 Query 33372 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTC 33431 ||||||||||| || ||||| || || || ||||||| || || ||||| || || Sbjct 937285 CAGGCCACGCTTCTTGAGCCAGAAGATTGAGGCGAATGCGCCGCTGAAAAAGATACCCTC 937226 Query 33432 TACTGCAGCAAAGGCAA 33448 || || || ||||||| Sbjct 937225 GACAGCGGCGAAGGCAA 937209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946374594960