Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq6 159 4e-34
seq3 91.5 2e-13
>seq6
Length=3061052
Score = 159 bits (176), Expect = 4e-34
Identities = 447/678 (66%), Gaps = 16/678 (2%)
Strand=Plus/Minus
Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077
|||| || || || |||| || ||||||| | ||| || |||| | || || || |
Sbjct 2276299 CCAGACCTGGGCACTCATTGGGGCACATCAGGGTCCAGTCGCCGTTCTTCTCGACACGCT 2276240
Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137
|||| || ||||| || ||||| || || | || ||||| | | | | |||||| |
Sbjct 2276239 TCATGAACAGATCTGGGATCCAGAGGGCCAAGAAAAGATCACGAGCACGAACTTCCTCCT 2276180
Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197
| || ||||| | ||||||||| | | | || | |||||| || || | |
Sbjct 2276179 TGCCGTGGTTCTTACGCAAGTCGAGGAACTCGAATACGTCGGCATGCCATGGCTCAAGAT 2276120
Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257
| ||||| | | ||||| || ||||| || ||||| || | |||||||| ||||| |
Sbjct 2276119 AGATGGCAAAGGCGCCAGGACGCTTGTTGCCACCCTGGTCAACATATCTAGCCGTGTTGT 2276060
Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317
| | || | | ||| || | | ||| |||||||| || ||||| || | || |||
Sbjct 2276059 TGAAGACCCGAAGCATGGGGACCAGACCGTTGGATGTTCCGTTGGTACCGGCAATGTAGG 2276000
Query 63318 TTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375
||| | ||||| || | |||| | || || || || |||||||| |||||
Sbjct 2275999 AACCAGTAGCACGGATGCGGTGGACGTTGA--GGCCGATACCGCCAGCCATTTTGGAGAT 2275942
Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435
| ||||| || | || |||||||| || || || || |||||| |||||| |
Sbjct 2275941 CATGGCGCAGGTCTTGAGGGTGTCATAGATACCATCAATGCTGTCATCCTTCATGTCGAC 2275882
Query 63436 TAGAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63494
|| || || |||| ||| ||| || ||| || ||||| || | || || ||||
Sbjct 2275881 CAGGAAGCAAGAGGACAGCTGG-GACTGAGGAGTACCGGCATTGAAGAGTGTGGGGGAAG 2275823
Query 63495 CGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGAGTCTATA 63550
|||| || || | || || | || || ||||||||||| ||| | | | |
Sbjct 2275822 CGTGGGTGAAGAACTTGCTCGACATGAGGTTATACGTCTCAATGACGCGCTCAATGT-TG 2275764
Query 63551 TC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 63609
|| || |||| || || || |||||||| | |||||||||||| | || |||||
Sbjct 2275763 TCTCCCCAGATG----CCGACAGCAACACGCATGATCATGTGCTGAGGACGCTCGACGAT 2275708
Query 63610 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63669
|||| || | || | | ||| || ||||||||| || || || || || | ||
Sbjct 2275707 CTTGCCGTCAAGCTTGAGGAGGTACGAGCGTTCCAAAGTCTTGAAGCCGAAGTACTGATA 2275648
Query 63670 TGAAAAGTCTCGTTCGTA 63687
||||| || |||||
Sbjct 2275647 GTTGAAGTCACGGTCGTA 2275630
>seq3
Length=5051094
Score = 91.5 bits (100), Expect = 2e-13
Identities = 285/438 (65%), Gaps = 4/438 (1%)
Strand=Plus/Minus
Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429
|| ||||| ||| | || || || ||||| || || || || || | | || || ||
Sbjct 937644 TTCTGGTAATCAGCTACCCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTC 937585
Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489
|||||||| ||||| || |||| || || || || || | | |||| || | |
Sbjct 937584 TCCATGAAGTCGAAGGGGTTGGAGACCTTGTAGATCTTCTCATTGCCCAGAGCAACGAGC 937525
Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549
|| | ||| ||||| || || || || ||||||| | | ||||| || | |||
Sbjct 937524 AAGCGATCCGCGACGAACTCAATGTACTGCTTCATCAGGGTAGAGTTCATGCCGAGAAGA 937465
Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609
|| | ||| |||| | ||||| || || || | ||| || || || |||||
Sbjct 937464 GCGCAGGGCAATGCCTCAGTCAAGAATTCCTGCTCGATTGTGACGGCATCGGTGATAATC 937405
Query 32610 GATCTTACTGT--TTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 32667
|| | || | ||| || || ||| | | || || | || || ||||
Sbjct 937404 TC-CTGAATGCGCTGCTTG-CTGGGGCGATGCTTCAGGTGAGAGAAGAGCAGGCAGGCGA 937347
Query 32668 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 32727
| ||| ||| || |||||||| | | || | |||||||| || || || |||||||
Sbjct 937346 AGTCGGTGTGGAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCA 937287
Query 32728 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 32787
| ||||||||||| || ||||| || || || || |||| || || || || || |
Sbjct 937286 TCAGGCCACGCTTCTTGAGCCAGAAGATTGAGGCGAATGCGCCGCTGAAAAAGATACCCT 937227
Query 32788 CTACTGCCGCAAAGGCAA 32805
| || || || |||||||
Sbjct 937226 CGACAGCGGCGAAGGCAA 937209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633631160437600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |