Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6 159 4e-34 seq3 91.5 2e-13 >seq6 Length=3061052 Score = 159 bits (176), Expect = 4e-34 Identities = 447/678 (66%), Gaps = 16/678 (2%) Strand=Plus/Minus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| || || || |||| || ||||||| | ||| || |||| | || || || | Sbjct 2276299 CCAGACCTGGGCACTCATTGGGGCACATCAGGGTCCAGTCGCCGTTCTTCTCGACACGCT 2276240 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 |||| || ||||| || ||||| || || | || ||||| | | | | |||||| | Sbjct 2276239 TCATGAACAGATCTGGGATCCAGAGGGCCAAGAAAAGATCACGAGCACGAACTTCCTCCT 2276180 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | || ||||| | ||||||||| | | | || | |||||| || || | | Sbjct 2276179 TGCCGTGGTTCTTACGCAAGTCGAGGAACTCGAATACGTCGGCATGCCATGGCTCAAGAT 2276120 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | ||||| | | ||||| || ||||| || ||||| || | |||||||| ||||| | Sbjct 2276119 AGATGGCAAAGGCGCCAGGACGCTTGTTGCCACCCTGGTCAACATATCTAGCCGTGTTGT 2276060 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | | || | | ||| || | | ||| |||||||| || ||||| || | || ||| Sbjct 2276059 TGAAGACCCGAAGCATGGGGACCAGACCGTTGGATGTTCCGTTGGTACCGGCAATGTAGG 2276000 Query 63318 TTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 ||| | ||||| || | |||| | || || || || |||||||| ||||| Sbjct 2275999 AACCAGTAGCACGGATGCGGTGGACGTTGA--GGCCGATACCGCCAGCCATTTTGGAGAT 2275942 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 | ||||| || | || |||||||| || || || || |||||| |||||| | Sbjct 2275941 CATGGCGCAGGTCTTGAGGGTGTCATAGATACCATCAATGCTGTCATCCTTCATGTCGAC 2275882 Query 63436 TAGAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63494 || || || |||| ||| ||| || ||| || ||||| || | || || |||| Sbjct 2275881 CAGGAAGCAAGAGGACAGCTGG-GACTGAGGAGTACCGGCATTGAAGAGTGTGGGGGAAG 2275823 Query 63495 CGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGAGTCTATA 63550 |||| || || | || || | || || ||||||||||| ||| | | | | Sbjct 2275822 CGTGGGTGAAGAACTTGCTCGACATGAGGTTATACGTCTCAATGACGCGCTCAATGT-TG 2275764 Query 63551 TC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 63609 || || |||| || || || |||||||| | |||||||||||| | || ||||| Sbjct 2275763 TCTCCCCAGATG----CCGACAGCAACACGCATGATCATGTGCTGAGGACGCTCGACGAT 2275708 Query 63610 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63669 |||| || | || | | ||| || ||||||||| || || || || || | || Sbjct 2275707 CTTGCCGTCAAGCTTGAGGAGGTACGAGCGTTCCAAAGTCTTGAAGCCGAAGTACTGATA 2275648 Query 63670 TGAAAAGTCTCGTTCGTA 63687 ||||| || ||||| Sbjct 2275647 GTTGAAGTCACGGTCGTA 2275630 >seq3 Length=5051094 Score = 91.5 bits (100), Expect = 2e-13 Identities = 285/438 (65%), Gaps = 4/438 (1%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 || ||||| ||| | || || || ||||| || || || || || | | || || || Sbjct 937644 TTCTGGTAATCAGCTACCCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTC 937585 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 |||||||| ||||| || |||| || || || || || | | |||| || | | Sbjct 937584 TCCATGAAGTCGAAGGGGTTGGAGACCTTGTAGATCTTCTCATTGCCCAGAGCAACGAGC 937525 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 || | ||| ||||| || || || || ||||||| | | ||||| || | ||| Sbjct 937524 AAGCGATCCGCGACGAACTCAATGTACTGCTTCATCAGGGTAGAGTTCATGCCGAGAAGA 937465 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 || | ||| |||| | ||||| || || || | ||| || || || ||||| Sbjct 937464 GCGCAGGGCAATGCCTCAGTCAAGAATTCCTGCTCGATTGTGACGGCATCGGTGATAATC 937405 Query 32610 GATCTTACTGT--TTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 32667 || | || | ||| || || ||| | | || || | || || |||| Sbjct 937404 TC-CTGAATGCGCTGCTTG-CTGGGGCGATGCTTCAGGTGAGAGAAGAGCAGGCAGGCGA 937347 Query 32668 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 32727 | ||| ||| || |||||||| | | || | |||||||| || || || ||||||| Sbjct 937346 AGTCGGTGTGGAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCA 937287 Query 32728 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 32787 | ||||||||||| || ||||| || || || || |||| || || || || || | Sbjct 937286 TCAGGCCACGCTTCTTGAGCCAGAAGATTGAGGCGAATGCGCCGCTGAAAAAGATACCCT 937227 Query 32788 CTACTGCCGCAAAGGCAA 32805 | || || || ||||||| Sbjct 937226 CGACAGCGGCGAAGGCAA 937209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631160437600