Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq3 154 1e-32
seq5 132 4e-26
seq7 104 2e-17
>seq3
Length=5051094
Score = 154 bits (170), Expect = 1e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || || || || || || ||| ||||||| || || || | | ||
Sbjct 3315860 ATGCAGATTTTCGTCAAGACCTTGACAGGCAAGACGATCACTCTCGAGGTTGAGAGCTCC 3315919
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| || |||| ||| || ||||||||||||||||| || || || ||
Sbjct 3315920 GACACGATCGACAATGTCAAGTCAAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 3315979
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || || ||||||||| | ||||| ||||||| ||||||| ||||||
Sbjct 3315980 CAGCGCCTGATTTTCGCTGGCAAACAGCTTGAGGACGGCCGCACCCTCTCCGACTACAAC 3316039
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || |||||| | ||| | ||| | || |||||||| |||
Sbjct 3316040 ATCCAGAAGGAGTCCACCCTCCATCTCGTTCTTCGTTTGCGCGGTGGT 3316087
Score = 111 bits (122), Expect = 1e-19
Identities = 129/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || ||||||| || || || | | | |||||| | ||| || ||||
Sbjct 3315656 ACCGGCAAGACCATCACTCTCGAGGTCGAGAGCTCTGATACCATCGACAATGTCAAGTCG 3315715
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| ||||||||||| ||||| || || || || ||| | || ||||| || ||
Sbjct 3315716 AAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTTTGATCTTTGCTGGAAAG 3315775
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416
||| | || ||| ||||||| | ||||| |||||||| || || || ||||||
Sbjct 3315776 CAGCTTGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACC 3315829
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || | ||||| || ||| |||| | ||||| || | |
Sbjct 3316088 ATGCAAATCTTCGTCAAGACCCTTACCGGCAAGACGATCACGTTGGAAGTCGAGTCATCA 3316147
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | | || || || ||||| |||||||| || || || || |||
Sbjct 3316148 GACACGATTGACAACGTGAAGAGCAAGATCCAAGATAAGGAGGGCATCCCTCCTGACCAA 3316207
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| |||||||| ||||| ||||| || | ||||| ||| ||| | ||| ||||||
Sbjct 3316208 CAGCGTCTTATCTTTGCTGGCAAGCAACTCGAGGACGGCCGAACCTTGAGCGACTACAAC 3316267
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||| || ||| ||| | || || ||| | || ||||| || |||
Sbjct 3316268 ATTCAGAAGGAAAGCACACTGCACTTGGTTCTCCGCTTGCGTGGCGGT 3316315
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || | || |||||||| | || | || || ||| ||| |
Sbjct 3316316 ATGCAAATCTTCGTCAAGACCCTGACGGGTAAAACTATTACCTTGGAGGTCGAATCCAGC 3316375
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || | | || || ||||| |||||||||||||| || || || ||
Sbjct 3316376 GATACCATCGATAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAG 3316435
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || || || || ||| | |||||| || || | ||| ||||||
Sbjct 3316436 CAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGATGGTCGTACTTTGAGCGACTACAAC 3316495
Query 22399 ATTCAAAAAGA 22409
||||| || ||
Sbjct 3316496 ATTCAGAAGGA 3316506
>seq5
Length=3459663
Score = 132 bits (146), Expect = 4e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| ||||| || || || | || ||||| || |||| ||||| ||||| |
Sbjct 1048942 AAGATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTTGAGGTGGAGTCT 1049001
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || ||| | ||| || |||| || || || ||||||||||| || || |||||
Sbjct 1049002 TCGGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 1049061
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || || || || || ||||| || ||| | ||||| ||||||| ||||||| |||
Sbjct 1049062 CAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 1049121
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||| || || || |||||| | || || || |||| |||| || |||
Sbjct 1049122 AACATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGCGCCTGCGTGGTGGT 1049172
>seq7
Length=2782040
Score = 104 bits (114), Expect = 2e-17
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286
||| || || || | || || || || |||| || || ||||| | |||| ||| |
Sbjct 1279330 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGACACCAT 1279389
Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346
||| || |||| || || || |||||||||||||| || || || || || |||||
Sbjct 1279390 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGTCT 1279449
Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| ||||| ||||| ||| | |||||| ||| ||| | ||||| ||||||||||| ||
Sbjct 1279450 GATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCCGACTACAACATTCAGAA 1279509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727457763890
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |