Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq3 127 4e-24
seq9 111 3e-19
seq2 95.1 2e-14
>seq3
Length=5051094
Score = 127 bits (140), Expect = 4e-24
Identities = 308/465 (66%), Gaps = 10/465 (2%)
Strand=Plus/Minus
Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601
|| || |||| ||| || |||||||| || | |||||| |||| ||||| ||||
Sbjct 937641 TGGTAATCAGCTACCCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCTCC 937582
Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661
||||||||||||||||| | | | ||||| ||| || ||| || || |||| | |
Sbjct 937581 ATGAAGTCGAAGGGGTTGGAGACCTTGTAGATCTTCTCATTGCCCAGAGCAACGAGCAAG 937522
Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721
|| || || || ||||| | ||||| |||||| |||||||||||| | | |
Sbjct 937521 CGATCCGCGACGAACTCAATGTACTGCTTCATCAGGGTAGAGTTCATGCCGAGAAGAGCG 937462
Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCC 251781
|| || | ||||||| | |||||||| ||| | | || || || | ||| ||
Sbjct 937461 CAGGGCAATGCCTCAGTCAAGAATTCCTGCTCGATTGTGACGGCATCGGTGATAATCTCC 937402
Query 251782 T---TCACCTG--TGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAA 251836
| | ||| ||| | | | | || ||| | ||| | || || | | |
Sbjct 937401 TGAATGCGCTGCTTGCTGGGGCGA-----TGCTTCAGGTGAGAGAAGAGCAGGCAGGCGA 937347
Query 251837 ACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCA 251896
| | ||| || |||||||| ||| ||||| ||||||||| | ||| || ||||
Sbjct 937346 AGTCGGTGTGGAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCA 937287
Query 251897 TCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCT 251956
||| ||||| ||| ||||||||||||||| | || | || ||| | | |||||
Sbjct 937286 TCAGGCCACGCTTCTTGAGCCAGAAGATTGAGGCGAATGCGCCGCTGAAAAAGATACCCT 937227
Query 251957 CGACACACACCCATGCAACAAGGCGCTCAGCAAACGACTTGTCCT 252001
||||| | | ||||| ||||||| ||| || || |||||
Sbjct 937226 CGACAGCGGCGAAGGCAACCAGGCGCTGAGCGAAAGAGGAGTCCT 937182
>seq9
Length=2573079
Score = 111 bits (122), Expect = 3e-19
Identities = 160/223 (72%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
||||||||||| || |||| ||||| || || || |||| ||||| ||||| |||
Sbjct 1188410 GGTGAGGATCTTTGCAACTGCACCTTCTCCCTTGCCTACGGTGCCAAGATCCTGCTCAAC 1188469
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|||| |||| | |||||||||| | || || |||||| ||||||||| || |
Sbjct 1188470 CAGACCCACCTCCGCCTCAAGCGTGGTCAGCGTTACGGTCTCTGCGGTCCCAACGGTTCC 1188529
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
||||| |||||| ||||| ||||| |||| ||| | | ||| ||||| | |||
Sbjct 1188530 GGTAAATCCACTCTCATGCGTGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 1188588
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566
||||| | ||| || | || ||||||||| ||||||||
Sbjct 1188589 GAGCGAGGTCAAGACTGTCTTCGTTGAGCACGACCTCGACTCC 1188631
Score = 102 bits (112), Expect = 2e-16
Identities = 168/240 (70%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 280152 TCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATC 280211
||| || ||| || |||| |||||||| ||||| ||||| || ||||| ||||| |||
Sbjct 1189217 TCTCTGGGCTCTCGTATTGCCGTCATTGGCCCCAACGGTGCCGGCAAGTCCACCCTGATC 1189276
Query 280212 AAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATG 280271
|| ||||| || ||| | |||||| || ||| |||| |||||
Sbjct 1189277 AACGTCCTCTGCGGTGAGCTCATCCCCACTGCTGGTGAGATTTACCAGCACGAGAACATC 1189336
Query 280272 CGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACT 280331
|| || || ||| || |||||||| || |||||| || ||||||||||||| ||||
Sbjct 1189337 CGTATCGCCTACATCAAGCAGCACGCCTTTGCCCACATTGATAACCACCTGGACAAGACT 1189396
Query 280332 CCTAACCAATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390
||| | | ||||| |||||||| | | || | ||| |||||| ||| | |||| ||
Sbjct 1189397 CCTTCCGAGTACATCCAGTGGCG-TTTCCAGACTGGCGAGGATCGTGAGACCATGGACCG 1189455
Score = 98.7 bits (108), Expect = 2e-15
Identities = 106/138 (77%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||| ||||| |||||| | ||||| |||||| ||||| ||| | | ||
Sbjct 1189812 CTCACTCCCGCATGCGCGGTTTGTCTGGTGGCCAGCGTGTCAAGACCGTCCTGGCTGCTT 1189871
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
|||| |||||| | ||||||| ||||||| ||||||||||| |||||||| ||||| ||
Sbjct 1189872 GCTC-GTGGCAGCGCCCTCACTTGATCGTCCTCGACGAGCCCACCAACTACCTGGATCGT 1189930
Query 280821 GAGAGCCTGGGCGCTCTG 280838
|| |||||| || |||
Sbjct 1189931 GACTCCCTGGGTGCCCTG 1189948
>seq2
Length=5234762
Score = 95.1 bits (104), Expect = 2e-14
Identities = 90/115 (78%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 279706 TGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATG 279765
|||| ||||| |||||||||||||| || || | || || || || | ||||||||| |
Sbjct 3679876 TGTCTGGTGGATGGAAGATGAAGCTCGCTCTGGCCCGAGCTATGCTGCAGCGTGCCGACG 3679935
Query 279766 TCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820
| || |||||||| ||||| ||||||||| |||| | ||||| | || |||||
Sbjct 3679936 TTCTTCTGCTTGACGAGCCTACCAACCACTTGGATGTCGCCAACATCGCTTGGCT 3679990
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027835404069146
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |