Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3 127 4e-24 seq9 111 3e-19 seq2 95.1 2e-14 >seq3 Length=5051094 Score = 127 bits (140), Expect = 4e-24 Identities = 308/465 (66%), Gaps = 10/465 (2%) Strand=Plus/Minus Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601 || || |||| ||| || |||||||| || | |||||| |||| ||||| |||| Sbjct 937641 TGGTAATCAGCTACCCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCTCC 937582 Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661 ||||||||||||||||| | | | ||||| ||| || ||| || || |||| | | Sbjct 937581 ATGAAGTCGAAGGGGTTGGAGACCTTGTAGATCTTCTCATTGCCCAGAGCAACGAGCAAG 937522 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721 || || || || ||||| | ||||| |||||| |||||||||||| | | | Sbjct 937521 CGATCCGCGACGAACTCAATGTACTGCTTCATCAGGGTAGAGTTCATGCCGAGAAGAGCG 937462 Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCC 251781 || || | ||||||| | |||||||| ||| | | || || || | ||| || Sbjct 937461 CAGGGCAATGCCTCAGTCAAGAATTCCTGCTCGATTGTGACGGCATCGGTGATAATCTCC 937402 Query 251782 T---TCACCTG--TGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAA 251836 | | ||| ||| | | | | || ||| | ||| | || || | | | Sbjct 937401 TGAATGCGCTGCTTGCTGGGGCGA-----TGCTTCAGGTGAGAGAAGAGCAGGCAGGCGA 937347 Query 251837 ACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCA 251896 | | ||| || |||||||| ||| ||||| ||||||||| | ||| || |||| Sbjct 937346 AGTCGGTGTGGAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCA 937287 Query 251897 TCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCT 251956 ||| ||||| ||| ||||||||||||||| | || | || ||| | | ||||| Sbjct 937286 TCAGGCCACGCTTCTTGAGCCAGAAGATTGAGGCGAATGCGCCGCTGAAAAAGATACCCT 937227 Query 251957 CGACACACACCCATGCAACAAGGCGCTCAGCAAACGACTTGTCCT 252001 ||||| | | ||||| ||||||| ||| || || ||||| Sbjct 937226 CGACAGCGGCGAAGGCAACCAGGCGCTGAGCGAAAGAGGAGTCCT 937182 >seq9 Length=2573079 Score = 111 bits (122), Expect = 3e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || |||| ||||| || || || |||| ||||| ||||| ||| Sbjct 1188410 GGTGAGGATCTTTGCAACTGCACCTTCTCCCTTGCCTACGGTGCCAAGATCCTGCTCAAC 1188469 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| |||| | |||||||||| | || || |||||| ||||||||| || | Sbjct 1188470 CAGACCCACCTCCGCCTCAAGCGTGGTCAGCGTTACGGTCTCTGCGGTCCCAACGGTTCC 1188529 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 ||||| |||||| ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 1188530 GGTAAATCCACTCTCATGCGTGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 1188588 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 ||||| | ||| || | || ||||||||| |||||||| Sbjct 1188589 GAGCGAGGTCAAGACTGTCTTCGTTGAGCACGACCTCGACTCC 1188631 Score = 102 bits (112), Expect = 2e-16 Identities = 168/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 280152 TCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATC 280211 ||| || ||| || |||| |||||||| ||||| ||||| || ||||| ||||| ||| Sbjct 1189217 TCTCTGGGCTCTCGTATTGCCGTCATTGGCCCCAACGGTGCCGGCAAGTCCACCCTGATC 1189276 Query 280212 AAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATG 280271 || ||||| || ||| | |||||| || ||| |||| ||||| Sbjct 1189277 AACGTCCTCTGCGGTGAGCTCATCCCCACTGCTGGTGAGATTTACCAGCACGAGAACATC 1189336 Query 280272 CGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACT 280331 || || || ||| || |||||||| || |||||| || ||||||||||||| |||| Sbjct 1189337 CGTATCGCCTACATCAAGCAGCACGCCTTTGCCCACATTGATAACCACCTGGACAAGACT 1189396 Query 280332 CCTAACCAATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||| | | ||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 1189397 CCTTCCGAGTACATCCAGTGGCG-TTTCCAGACTGGCGAGGATCGTGAGACCATGGACCG 1189455 Score = 98.7 bits (108), Expect = 2e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| ||||| |||||| | ||||| |||||| ||||| ||| | | || Sbjct 1189812 CTCACTCCCGCATGCGCGGTTTGTCTGGTGGCCAGCGTGTCAAGACCGTCCTGGCTGCTT 1189871 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 |||| |||||| | ||||||| ||||||| ||||||||||| |||||||| ||||| || Sbjct 1189872 GCTC-GTGGCAGCGCCCTCACTTGATCGTCCTCGACGAGCCCACCAACTACCTGGATCGT 1189930 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || |||||| || ||| Sbjct 1189931 GACTCCCTGGGTGCCCTG 1189948 >seq2 Length=5234762 Score = 95.1 bits (104), Expect = 2e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 279706 TGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATG 279765 |||| ||||| |||||||||||||| || || | || || || || | ||||||||| | Sbjct 3679876 TGTCTGGTGGATGGAAGATGAAGCTCGCTCTGGCCCGAGCTATGCTGCAGCGTGCCGACG 3679935 Query 279766 TCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820 | || |||||||| ||||| ||||||||| |||| | ||||| | || ||||| Sbjct 3679936 TTCTTCTGCTTGACGAGCCTACCAACCACTTGGATGTCGCCAACATCGCTTGGCT 3679990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835404069146