Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq5 194 3e-44
seq3 134 3e-26
seq7 116 7e-21
seq9 100 5e-16
>seq5
Length=3459663
Score = 194 bits (214), Expect = 3e-44
Identities = 179/227 (79%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| |||||||| || |||||||| || |||||||| || ||||||
Sbjct 1049171 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1049112
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || || | || |||||||| ||
Sbjct 1049111 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 1049052
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | |||||| ||||||||||| | || || ||
Sbjct 1049051 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCCACC 1048992
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || |||||||||||||||||||| ||||||||
Sbjct 1048991 TCAAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 1048945
>seq3
Length=5051094
Score = 134 bits (148), Expect = 3e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||| ||| || ||| ||| || || ||||| || |||
Sbjct 3316542 CCGCCACGGAGACGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 3316483
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | ||||| || | |||||| || ||||| || || | || ||||| || ||
Sbjct 3316482 AAAGTACGACCATCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGGGGG 3316423
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG-ATTCTAC 68413
|| || |||||||| |||||||| ||| ||| |||||||| || |||| |||| ||
Sbjct 3316422 ATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTATCGATGGTATC-GCTGGATTCGAC 3316364
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||||| || ||||| ||||| |||||||||||||| || |||||
Sbjct 3316363 CTCCAAGGTAATAGTTTTACCCGTCAGGGTCTTGACGAAGATTTGCAT 3316316
Score = 127 bits (140), Expect = 4e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318
|| || |||||||| || |||||||| || |||||||| || | || || || | |||
Sbjct 3316062 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGT 3316003
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || ||||| || || | || ||||| || || || || ||||||||||| ||||||
Sbjct 3316002 TTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTT 3315943
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
| |||||| ||||| ||||| | || || || | ||||| || || || ||
Sbjct 3315942 GACTTGACATTGTCGATCGTGTCGGAGCTCTCAACCTCGAGAGTGATCGTCTTGCCTGTC 3315883
Query 68439 AGGGTCTTGACGAATATCTGCAT 68461
| |||||||||||| ||||||||
Sbjct 3315882 AAGGTCTTGACGAAAATCTGCAT 3315860
Score = 122 bits (134), Expect = 2e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || | ||| | |||||||| || ||| || || || ||||| || |||
Sbjct 3316314 CCGCCACGCAAGCGGAGAACCAAGTGCAGTGTGCTTTCCTTCTGAATGTTGTAGTCGCTC 3316255
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | || || || | ||||| || || || || || | |||||||| || ||
Sbjct 3316254 AAGGTTCGGCCGTCCTCGAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAGGG 3316195
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||| ||||| ||||| ||| ||| || || ||||||| ||| || |||
Sbjct 3316194 ATGCCCTCCTTATCTTGGATCTTGCTCTTCACGTTGTCAATCGTGTCTGATGACTCGACT 3316135
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| ||||| || || || || |||||||||||||| || |||||
Sbjct 3316134 TCCAACGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 3316088
Score = 116 bits (128), Expect = 7e-21
Identities = 314/478 (66%), Gaps = 18/478 (4%)
Strand=Plus/Minus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
||||||||| ||||||||||| || | |||||| |||||||||||||| |||||| |
Sbjct 937657 CATGACGCCGGCCTTCTGGTAATCAGCTACCCGCTTCTCGAAGAAGTTGGTCTTGCCACC 937598
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054
||||| ||| |||||||||||| |||||||| | | | ||| | ||
Sbjct 937597 CAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAGACCTTGTAGATCTTCTCATTGCC 937538
Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114
|| || || | ||| || || |||||||| |||||||| |||||||| |||||
Sbjct 937537 CAGAGCAACGAGCAAGCGATCCGCGACGAACTCAATGTACTGCTTCATCAGGGTAGAGTT 937478
Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174
|||||| | | |||||| | || || | ||| |||| ||| | | ||| |
Sbjct 937477 CATGCCGAGAAGAGCGCAGGGCAATGCCTCAGTCAAGAATTCCTGCTCGATTGTGACGG- 937419
Query 10175 TTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTT--CTCGA-GCTTC----- 10226
| ||| ||| ||| | | || | | ||||| | ||| |||||
Sbjct 937418 --CATCGGTGATAATCT------CCTGAATGCGCTGCTTGCTGGGGCGATGCTTCAGGTG 937367
Query 10227 -GAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTT 10285
|| | || || | || | ||||||||||||||| || ||||| ||||||
Sbjct 937366 AGAGAAGAGCAGGCAGGCGAAGTCGGTGTGGAGGCCCTCGTCACGAGAGATGAGCTCGTT 937307
Query 10286 GGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGA 10345
||| || |||||||||||| || || || || |||||||| || | | ||| |
Sbjct 937306 GGAGAAGGTCAGACCGGGCATCAGGCCACGCTTCTTGAGCCAGAAGATTGAGGCGAATGC 937247
Query 10346 CCCGGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAG 10403
||| ||| | | |||||| || | |||| || ||||||| ||||| |||
Sbjct 937246 GCCGCTGAAAAAGATACCCTCGACAGCGGCGAAGGCAACCAGGCGCTGAGCGAAAGAG 937189
>seq7
Length=2782040
Score = 116 bits (128), Expect = 7e-21
Identities = 133/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| || ||||| || ||||| || || | ||||| || | |||||| || || || ||
Sbjct 1279509 TTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 1279450
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | || ||||| || || || || |||||||| || ||||| | |||||| |||
Sbjct 1279449 AGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1279390
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||||||| | || || || || | ||||||||| || ||||| |||||||| |||||
Sbjct 1279389 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1279331
>seq9
Length=2573079
Score = 100 bits (110), Expect = 5e-16
Identities = 130/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 225817 GGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCC 225876
|||||| ||||| | ||| | || || ||||| | || || || || | ||
Sbjct 1188583 GGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACGCATGAGAGTGGATTTACCGGAACC 1188524
Query 225877 GTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAG 225936
|||||||||| ||| |||||| | | || ||||||| | |||| | || ||| ||
Sbjct 1188523 GTTGGGACCGCAGAGACCGTAACGCTGACCACGCTTGAGGCGGAGGTGGGTCTGGTTGAG 1188464
Query 225937 GAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996
||||||||| |||| |||||||||||||| ||| | ||| || ||||||||||||||
Sbjct 1188463 CAGGATCTTGGCACCGTAGGCAAGGGAGAAGGTGCAGTTGCAAAGATCCTCACCCTCCTC 1188404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921621178850320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |