Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6 316 4e-81 seq3 210 4e-49 >seq6 Length=3061052 Score = 316 bits (350), Expect = 4e-81 Identities = 1003/1526 (66%), Gaps = 59/1526 (4%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || || | |||||| | |||| || || Sbjct 2277138 GTTGACGACCTGGAACTCACCAGCCAAGACACGTCTCTGGTAAATGTTGGAAGTGTAAGG 2277079 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 || | || || ||||||| || || |||| || || || || |||||||| | || Sbjct 2277078 TTCAAAGCATTCATTGTTGCCGAGAATTTGCGAGGTACTGGCTGTGGGCATGGGAGCTAC 2277019 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGA--TGCGGAGTCTGAGCTCGTTCCAGTCC 244267 ||||| ||||| | | |||||| || || ||| | | || || | ||| ||| Sbjct 2277018 CAGCAAGCTGTTGCGGATACCGTGCTCCTTGACCTGCTCA--CGAAGGTCCTCCCACTCC 2276961 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 |||| |||| | | || |||| |||||||||||||||||| | |||| | Sbjct 2276960 CACAGATCCGATGGCT--TCACGTT-------CCACATGTCAAACTGCAGGATGCCCTCG 2276910 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTG-GGCCAGCTTA-CAGC 244385 | || |||| | | | | ||| || || | || || ||| |||| | | | Sbjct 2276909 GAAGCAGGAGATCCCTTGAATGACTCGTAAGGGCCCT-GCTCTTTGGCGAGCTCAACCGA 2276851 Query 244386 TCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT 244445 |||| ||| |||||| ||| ||||| || |||||| |||||||| || || |||| Sbjct 2276850 AGCCGTCAAGG-CGGCGTGGTAAATGGTTTCAAAGATCTGCTTGTTCAACTCACGAGCCT 2276792 Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 | | |||||||| | || || ||| | || || || || || || || | Sbjct 2276791 CGGGTGACTCGAAGGGGAGTCTCAGGGCCAAGAAAGCATCAGCGAGACCTTGAACACCCA 2276732 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565 ||| ||||||| ||| ||| ||||| | ||| || | |||||||| |||| Sbjct 2276731 CGCCAATGGGTCGGTGACGCATGTTGCTGTTTCGGGCCTCCTGGACGGGGTAGTGGTTGA 2276672 Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAA 244625 |||| || | |||||||| |||||| || | | ||| || |||| ||| | Sbjct 2276671 CGTCAATGATTTTGTTGAGATTGCGGACGACGACCTGAGTGACCTCATGCAGCTTCTGGA 2276612 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTG--AGGGCGAC 244683 | ||||| | || ||||| | | || | || || | || || || | Sbjct 2276611 AATCGTA---GCAGC---CCTCGTTG-TAGTCA-----ACGAAG--GATGGCAGAGCCAG 2276566 Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCA 244743 ||||||||||| ||||||||||| || | | | ||||| || ||||||||||| Sbjct 2276565 AGAAGCCAGGTTGCAAACGGCCACCTCGTCAGGGGCGCAGTACTCGATGATCTCGGTGCA 2276506 Query 244744 GAGGTTACTGCACTT--GATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCG 244801 |||||| | |||| ||| || || |||| || || ||| |||| ||||||| Sbjct 2276505 GAGGTTG--GAACTTCGGATTGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGA 2276448 Query 244802 TCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAG 244861 |||||||||||||||||||| |||||||| |||||| |||| | || ||| Sbjct 2276447 TCCTTGTAGAGCATGAAGGGGTTACCGGTCTCAGTCTGGGCCTCGAGAATAGAGTACCAC 2276388 Query 244862 AGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGCGGGTGTACAG 244920 || | | ||||||| ||| |||| ||| | ||||| |||||| |||| Sbjct 2276387 AGCTTCTGGGCCTTGATGGTCTTGCG-GCCGCGACCCTCGCTCTCGTACTTCTCATACAA 2276329 Query 244921 GGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAG 244980 |||||| ||||| ||| || ||| | || || |||||| |||||||| || Sbjct 2276328 GGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGACCTGGGCACTCATTGGGGCACATCAG 2276269 Query 244981 ACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTG 245040 |||| |||||| | || ||| | || |||||| || || ||||||||||||||| Sbjct 2276268 GGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCTGGGATCCAGAGGGCCAA 2276209 Query 245041 GAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTC 245100 ||| || || | | | || ||| ||| |||||| | || || | || || Sbjct 2276208 GAAAAGATCACGAGCACGAACTTCCTCCTTGCCGTGGTTCTTACGCAAGTCGAGGAACTC 2276149 Query 245101 AAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCC 245160 || |||||| | ||||| ||||| | |||| || | |||||| || ||||||||||| Sbjct 2276148 GAATACGTCGGCATGCCATGGCTCAAGATAGATGGCAAAGGCGCCAGGACGCTTGTTGCC 2276089 Query 245161 TCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 |||||||| || ||| || | |||||||| || || | || || | |||| Sbjct 2276088 ACCCTGGTCAACATATCTAGCCGTG-TTGTTGAAGACCCGAAGCATGGGGACCAGACCGT 2276030 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC- 245278 | || |||||||| || ||||||| || | | | || ||| | ||||| Sbjct 2276029 TGGATGTTCCGTTGGTACCGGCAATGTAGGAACCAGTAGCAC---GGATGC-GGTGGACG 2275974 Query 245279 ---ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCT 245335 | ||| | ||||| || |||||||| | ||||||| |||||| |||||| Sbjct 2275973 TTGAGGCCGATACCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAG 2275914 Query 245336 ATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG 245395 || || || |||||||| |||||||| || ||| ||||| ||||||||||||| || Sbjct 2275913 ATACCATCAATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGACAGCTGGGACTGA 2275854 Query 245396 GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAAC 245455 || | | | ||||| || |||||| |||||||| ||| | |||||| | || Sbjct 2275853 GGAGTACCGGCATTGAAGAGTGTGGGGGAAGCGTGGGTGAAGAACTTGCTCGACATGAGG 2275794 Query 245456 CCGTACGTCTGGA-GCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCA--CCTC 245512 ||||||| | | | || || |||||||| || || ||| | ||| | | Sbjct 2275793 TTATACGTCTCAATGACGCGC-TCAATGTTGTCTCCCCAGA--TGCCGACAGCAACACGC 2275737 Query 245513 ATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTC--CCTTGAGCATGTAGGAGC 245570 |||| ||||||| || ||||| | | | ||| |||||| | ||| |||| Sbjct 2275736 ATGATCATGTGCTGAGGACGCTCGA--CGATCTTGCCGTCAAGCTTGAGGAGGTACGAGC 2275679 Query 245571 GCTCGAGCGTCTTGAACCCAAAGTAC 245596 | || | |||||||| || |||||| Sbjct 2275678 GTTCCAAAGTCTTGAAGCCGAAGTAC 2275653 >seq3 Length=5051094 Score = 210 bits (232), Expect = 4e-49 Identities = 352/504 (70%), Gaps = 9/504 (2%) Strand=Plus/Plus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGG 42704 |||||||| || ||||| || |||||| || | ||| | | |||| || | Sbjct 937145 AAGAAGGCCGATTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCTTTCGCTCAGCGC 937204 Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 ||||| ||||| |||| |||||||| ||||| ||| ||||| |||||||| |||||| Sbjct 937205 CTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTTTTCAGCGGCGCATTCGCCTCAATCTTC 937264 Query 42765 TGGCTCAAGCAGAAGGTGTC--GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 ||||||||| || ||| | ||||||||| || |||||||| ||||| |||||| Sbjct 937265 TGGCTCAAGAAG--CGTGGCCTGATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTC 937322 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 | |||||||| || || | ||||| |||||||| || ||||| ||||| | ||| Sbjct 937323 GTGACGAGGGCCTCCACACCGACTTCGCCTGCCTGCTCTTCTC---TCACCTGAAGCATC 937379 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 ||| ||| |||| | | || || ||||| || ||||| |||||| |||| | Sbjct 937380 GCCCCAGCAAGCAGCGCATTCAGGAGATTATCACCGATGCCGTCACAATCGAGCAGGAAT 937439 Query 42943 TCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGT 43002 || | || || | ||||| | || ||||||||||| ||| ||| ||| Sbjct 937440 TCTTGACTGAGGCATTGCCCTGCGCTCTTCTCGGCATGAACTCTACCCTGATGAAGCAGT 937499 Query 43003 ACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAAC 43061 |||| ||| |||||| || | | || || | || | || | ||||||| Sbjct 937500 ACATTGAGTTCGTCGCGGATCGCTTGCTCGTTGCTCTGGGCAATGAGAAG-ATCTACAAG 937558 Query 43062 ACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTC 43121 | |||||||||||| |||||||||||||| ||| |||||||||||||| ||| Sbjct 937559 GTCTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGTGGCAAGACCAACTTCTTC 937618 Query 43122 GAGAAGCGCGTCGCCGACTACCAG 43145 |||||||| || || || |||||| Sbjct 937619 GAGAAGCGGGTAGCTGATTACCAG 937642 Score = 136 bits (150), Expect = 7e-27 Identities = 208/292 (71%), Gaps = 11/292 (4%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||||||||||||||| || || Sbjct 936735 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATCGATCTC 936794 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 |||||||| || |||| | || |||| | || | || |||| ||| || Sbjct 936795 TCCAAGGACCTTCACGACTGGAACA-ACCGTCTCAACGATGATGAGAAGTACTTCGTCTC 936853 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| ||||| |||||||| ||||| || ||||| |||||||||||||||| | | Sbjct 936854 TCACATCCTGGCTTTCTTCGCTGCCTCGGATGGCATTGTCAATGAGAACCTGGTCGAGCG 936913 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| | ||||| || |||||||||||||||||||| || Sbjct 936914 ATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGTTGCTTCTACGGCTTCCAGATCATGAT 936973 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATC 42584 |||||| | ||||| ||| ||| || ||||||| | || |||||| Sbjct 936974 GGAGAACATCCACTCCGAGACCTACTCC---CTGCTCATCGATACCTACATC 937022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337948750560