Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 1e-12 seq9 86.0 1e-11 >seq3 Length=5051094 Score = 89.7 bits (98), Expect = 1e-12 Identities = 164/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 || ||||| || || || || ||| |||||||| | || || | || ||| Sbjct 937406 ATTATCACCGATGCCGTCACAATCGAGCAGGAATTCTTGACTGAGGCATTGCCCTGCGCT 937465 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 ||| | |||||||||||| || ||| |||||||| || ||||| || || ||| | Sbjct 937466 CTTCTCGGCATGAACTCTACCCTGATGAAGCAGTACATTGAGTTCGTCGCGGATCGCTTG 937525 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAA---CTCCAAGAACCCCTTTGCCTTTATG 243678 || | || || || ||||||| | ||||| |||| |||||||| | ||| ||| Sbjct 937526 CTCGTTGCTCTGGGCAATGAGAAGATCTACAAGGTCTCC---AACCCCTTCGACTTCATG 937582 Query 243679 GAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||| ||| || || || || || ||||||||||| ||||| || |||||| || Sbjct 937583 GAGAACATCTCCCTGGGTGGCAAGACCAACTTCTTCGAGAAGCGGGTAGCTGATTACCA 937641 >seq9 Length=2573079 Score = 86.0 bits (94), Expect = 1e-11 Identities = 171/251 (68%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164 |||||||| ||| ||| | | ||||| |||||| ||||| || ||| | |||| | Sbjct 1188659 AGTCAATGGTAGTCATCTCGGTATCGGCGGAGTCGAGGTCGTGCTCAACGAAGACAGTCT 1188600 Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223 | | | || || ||| |||||| ||| ||| |||| || || ||||| ||| Sbjct 1188599 TGACCTCGCTCTGCTTGGGGAAACCCT-CAACCTGCTCGTTGTTGATGGCACGCATGAGA 1188541 Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283 || |||||||| | ||||| || || || |||||||| || | |||||||| || | Sbjct 1188540 GTGGATTTACCGGAACCGTTGGGACCGCAGAGACCGTAACGCTGACCACGCTTGAGGCGG 1188481 Query 334284 AACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 334343 | | || | ||| || || || || |||| || || || || || || | || Sbjct 1188480 AGGTGGGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCAAGGGAGAAGGTGCAGTTGCAA 1188421 Query 334344 AGATCCTCACC 334354 ||||||||||| Sbjct 1188420 AGATCCTCACC 1188410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102878502151100