Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq3 89.7 1e-12
seq9 86.0 1e-11
>seq3
Length=5051094
Score = 89.7 bits (98), Expect = 1e-12
Identities = 164/239 (69%), Gaps = 6/239 (3%)
Strand=Plus/Plus
Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561
|| ||||| || || || || ||| |||||||| | || || | || |||
Sbjct 937406 ATTATCACCGATGCCGTCACAATCGAGCAGGAATTCTTGACTGAGGCATTGCCCTGCGCT 937465
Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621
||| | |||||||||||| || ||| |||||||| || ||||| || || ||| |
Sbjct 937466 CTTCTCGGCATGAACTCTACCCTGATGAAGCAGTACATTGAGTTCGTCGCGGATCGCTTG 937525
Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAA---CTCCAAGAACCCCTTTGCCTTTATG 243678
|| | || || || ||||||| | ||||| |||| |||||||| | ||| |||
Sbjct 937526 CTCGTTGCTCTGGGCAATGAGAAGATCTACAAGGTCTCC---AACCCCTTCGACTTCATG 937582
Query 243679 GAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737
||| ||| || || || || || ||||||||||| ||||| || |||||| ||
Sbjct 937583 GAGAACATCTCCCTGGGTGGCAAGACCAACTTCTTCGAGAAGCGGGTAGCTGATTACCA 937641
>seq9
Length=2573079
Score = 86.0 bits (94), Expect = 1e-11
Identities = 171/251 (68%), Gaps = 2/251 (1%)
Strand=Plus/Minus
Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164
|||||||| ||| ||| | | ||||| |||||| ||||| || ||| | |||| |
Sbjct 1188659 AGTCAATGGTAGTCATCTCGGTATCGGCGGAGTCGAGGTCGTGCTCAACGAAGACAGTCT 1188600
Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223
| | | || || ||| |||||| ||| ||| |||| || || ||||| |||
Sbjct 1188599 TGACCTCGCTCTGCTTGGGGAAACCCT-CAACCTGCTCGTTGTTGATGGCACGCATGAGA 1188541
Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283
|| |||||||| | ||||| || || || |||||||| || | |||||||| || |
Sbjct 1188540 GTGGATTTACCGGAACCGTTGGGACCGCAGAGACCGTAACGCTGACCACGCTTGAGGCGG 1188481
Query 334284 AACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 334343
| | || | ||| || || || || |||| || || || || || || | ||
Sbjct 1188480 AGGTGGGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCAAGGGAGAAGGTGCAGTTGCAA 1188421
Query 334344 AGATCCTCACC 334354
|||||||||||
Sbjct 1188420 AGATCCTCACC 1188410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102878502151100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |