Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq3 116 4e-21
seq5 114 1e-20
seq7 96.9 4e-15
>seq3
Length=5051094
Score = 116 bits (128), Expect = 4e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071
||||||||||| ||||| ||||| || || ||| || | || || ||||||||||||
Sbjct 3316512 GTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTACGACCATCCTCCAGCTGCTTACCA 3316453
Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TT 42130
||||| || || ||||||||||| | || | | |||||||||| ||| | || | ||
Sbjct 3316452 GCGAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCC-TGAATCTTGCTCTT 3316394
Query 42131 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190
| | | | || ||||| ||||| || || | || || ||||| ||||| || ||
Sbjct 3316393 CACGTTATCGATGGTATCGCTGGATTCGACCTCCAAGGTAATAGTTTTACCCGTCAGGGT 3316334
Query 42191 CTTTACAAAGATTTGCAT 42208
||| || |||||||||||
Sbjct 3316333 CTTGACGAAGATTTGCAT 3316316
Score = 102 bits (112), Expect = 9e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| |||| |||||| ||||| ||||| ||||| || || || || |||| ||
Sbjct 3316296 ACCAAGTGCAGTGTGCTTTCCTTCTGAATGTTGTAGTCGCTCAAGGTTCGGCCGTCCTCG 3316237
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
|| ||||| ||||| || || || ||||| ||||| | || | || |||||| || |
Sbjct 3316236 AGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTATCTTGG 3316177
Query 42120 ATTTTTTGTTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
|| || || | ||| | || |||||| || || || || | |||||| || ||
Sbjct 3316176 ATCTTGCTCTTCA-CGTTGTCAATCGTGTCTGATGACTCGACTTCCAACGTGATCGTCTT 3316118
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| || || ||||| || |||||||||||
Sbjct 3316117 GCCGGTAAGGGTCTTGACGAAGATTTGCAT 3316088
Score = 84.2 bits (92), Expect = 2e-11
Identities = 152/221 (69%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050
||||| | || | ||| | ||| |||||| || || ||||| || | || || ||
Sbjct 3316077 AAACGAAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 3316018
Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110
|||| || ||||| || |||||||| || || ||||||||||| | || | | ||||
Sbjct 3316017 CCGTCCTCAAGCTGTTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCC 3315958
Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACC 42167
||||| ||| ||| |||| | | | |||||| |||| || || ||||
Sbjct 3315957 TTGTCTTGGATCTTTGACTTGACATTGTCGATCGTGTCGGAGCTC---TCAACCTCGAGA 3315901
Query 42168 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||| || ||||| || | ||||| || || || |||||
Sbjct 3315900 GTGATCGTCTTGCCTGTCAAGGTCTTGACGAAAATCTGCAT 3315860
>seq5
Length=3459663
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| |||||| |||| ||| |||||| || || ||||| || | || || || ||
Sbjct 1049159 CGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 1049100
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || |||||||| || ||||| || || ||||||||||||| || | || |||||||
Sbjct 1049099 TCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 1049040
Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173
||| ||| || |||| | | | ||||| || ||||| || | ||||||
Sbjct 1049039 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATG 1048980
Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
|| || ||||| || ||||| || || || ||||| ||
Sbjct 1048979 GTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1048942
>seq7
Length=2782040
Score = 96.9 bits (106), Expect = 4e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| ||||| ||||| || | ||| || || | || || |||||||| ||||| || |
Sbjct 1279511 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 1279452
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| || ||||||||||| | || | | |||||||||| ||| || |||| |
Sbjct 1279451 TCAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1279392
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | |||||| || ||||| |||| |||||||| |||||||| || ||||| || |
Sbjct 1279391 CGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 1279332
Query 42199 A 42199
|
Sbjct 1279331 A 1279331
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212080243040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |