Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3 116 4e-21 seq5 114 1e-20 seq7 96.9 4e-15 >seq3 Length=5051094 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| ||||| ||||| || || ||| || | || || |||||||||||| Sbjct 3316512 GTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTACGACCATCCTCCAGCTGCTTACCA 3316453 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TT 42130 ||||| || || ||||||||||| | || | | |||||||||| ||| | || | || Sbjct 3316452 GCGAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCC-TGAATCTTGCTCTT 3316394 Query 42131 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190 | | | | || ||||| ||||| || || | || || ||||| ||||| || || Sbjct 3316393 CACGTTATCGATGGTATCGCTGGATTCGACCTCCAAGGTAATAGTTTTACCCGTCAGGGT 3316334 Query 42191 CTTTACAAAGATTTGCAT 42208 ||| || ||||||||||| Sbjct 3316333 CTTGACGAAGATTTGCAT 3316316 Score = 102 bits (112), Expect = 9e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| |||| |||||| ||||| ||||| ||||| || || || || |||| || Sbjct 3316296 ACCAAGTGCAGTGTGCTTTCCTTCTGAATGTTGTAGTCGCTCAAGGTTCGGCCGTCCTCG 3316237 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| ||||| || || || ||||| ||||| | || | || |||||| || | Sbjct 3316236 AGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTATCTTGG 3316177 Query 42120 ATTTTTTGTTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 || || || | ||| | || |||||| || || || || | |||||| || || Sbjct 3316176 ATCTTGCTCTTCA-CGTTGTCAATCGTGTCTGATGACTCGACTTCCAACGTGATCGTCTT 3316118 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || ||||| || ||||||||||| Sbjct 3316117 GCCGGTAAGGGTCTTGACGAAGATTTGCAT 3316088 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 ||||| | || | ||| | ||| |||||| || || ||||| || | || || || Sbjct 3316077 AAACGAAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 3316018 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 |||| || ||||| || |||||||| || || ||||||||||| | || | | |||| Sbjct 3316017 CCGTCCTCAAGCTGTTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCC 3315958 Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACC 42167 ||||| ||| ||| |||| | | | |||||| |||| || || |||| Sbjct 3315957 TTGTCTTGGATCTTTGACTTGACATTGTCGATCGTGTCGGAGCTC---TCAACCTCGAGA 3315901 Query 42168 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || ||||| || | ||||| || || || ||||| Sbjct 3315900 GTGATCGTCTTGCCTGTCAAGGTCTTGACGAAAATCTGCAT 3315860 >seq5 Length=3459663 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||||| |||| ||| |||||| || || ||||| || | || || || || Sbjct 1049159 CGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 1049100 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| || || ||||||||||||| || | || ||||||| Sbjct 1049099 TCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 1049040 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || |||| | | | ||||| || ||||| || | |||||| Sbjct 1049039 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATG 1048980 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || || ||||| || ||||| || || || ||||| || Sbjct 1048979 GTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1048942 >seq7 Length=2782040 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| ||||| ||||| || | ||| || || | || || |||||||| ||||| || | Sbjct 1279511 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 1279452 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | || | | |||||||||| ||| || |||| | Sbjct 1279451 TCAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1279392 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | |||||| || ||||| |||| |||||||| |||||||| || ||||| || | Sbjct 1279391 CGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 1279332 Query 42199 A 42199 | Sbjct 1279331 A 1279331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212080243040