Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5 149 7e-31 seq3 120 3e-22 seq7 111 2e-19 >seq5 Length=3459663 Score = 149 bits (164), Expect = 7e-31 Identities = 165/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| || |||||| ||||| ||||||||||| || ||||| || Sbjct 1049159 CGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 1049100 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| |||||||| |||| |||||||||||||| || | || ||||||| Sbjct 1049099 TCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 1049040 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| | | | ||||| || ||||| || | |||||| Sbjct 1049039 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATG 1048980 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 || || ||||| || || || || || || ||||| |||| Sbjct 1048979 GTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATCTTGC 1048940 >seq3 Length=5051094 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | || |||||||| || || ||||||||| | ||| || | || || Sbjct 3316524 ACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTACGACCATCCTCC 3316465 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| |||| ||||||||||| | || | | |||||||||| Sbjct 3316464 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGA 3316405 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| |||| | | | | || ||||| ||||| || |||| || || ||||| Sbjct 3316404 ATCTTGCTCTTCACGTTATCGATGGTATCGCTGGATTCGACCTCCAAGGTAATAGTTTTA 3316345 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || || || ||||||||||| Sbjct 3316344 CCCGTCAGGGTCTTGACGAAGATTTGCAT 3316316 Score = 111 bits (122), Expect = 2e-19 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 ||||| | || ||||| | || |||||| ||||| ||||||||||| || ||||| Sbjct 3316077 AAACGAAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 3316018 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 |||| || ||||| ||||| ||||| |||| |||||||||||| | || | | |||| Sbjct 3316017 CCGTCCTCAAGCTGTTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCC 3315958 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACC 46552 ||||| |||||| ||||| | | | |||||| |||| || || || | Sbjct 3315957 TTGTCTTGGATCTTTGACTTGACATTGTCGATCGTGTCGGAGCTC---TCAACCTCGAGA 3315901 Query 46553 GTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || ||||| |||| || || || || || ||||| Sbjct 3315900 GTGATCGTCTTGCCTGTCAAGGTCTTGACGAAAATCTGCAT 3315860 Score = 105 bits (116), Expect = 8e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||| ||| || ||||| || || ||||||||| | || || |||| ||| Sbjct 3316296 ACCAAGTGCAGTGTGCTTTCCTTCTGAATGTTGTAGTCGCTCAAGGTTCGGCCGTCCTCG 3316237 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || |||||||| || || || | ||||| ||||| | || | || |||||| || | Sbjct 3316236 AGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTATCTTGG 3316177 Query 46505 ATCTTCTTCTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||| | ||| | || |||||| || || || |||| |||||| || || Sbjct 3316176 ATCTTGCTCTTCA-CGTTGTCAATCGTGTCTGATGACTCGACTTCCAACGTGATCGTCTT 3316118 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || || ||||||||||| Sbjct 3316117 GCCGGTAAGGGTCTTGACGAAGATTTGCAT 3316088 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || || |||||||| || || || Sbjct 3315823 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAA 3315764 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 ||||| ||||||||||| | || | || |||||||||| |||||| ||||| Sbjct 3315763 GATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGA 3315708 >seq7 Length=2782040 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| || || ||||||||||| || || || | || |||||||||||||| || || | Sbjct 1279511 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 1279452 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||||||||| | || | | |||||||||| |||||| ||||| | Sbjct 1279451 TCAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1279392 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | |||||| || ||||| || | |||||||| ||||||||||| || || || | Sbjct 1279391 CGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 1279332 Query 46584 A 46584 | Sbjct 1279331 A 1279331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237651059120