Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6 208 9e-49 seq3 113 6e-20 seq9 93.3 5e-14 >seq6 Length=3061052 Score = 208 bits (230), Expect = 9e-49 Identities = 1124/1775 (63%), Gaps = 41/1775 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| || || |||| ||| || || | ||||| || Sbjct 2275720 CCTCAGCACATGATCATGCGTGTTGCTGTCGGCATCTGGGGAGACAACATTGAGCGCGTC 2275779 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| || || ||||| | | |||| |||||| | || || |||||| Sbjct 2275780 ATTGAGACGTATAACCTCATGTCGAGCAAGTTCTTCACCCACGCTTCCCCCACACTCTTC 2275839 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 || || ||||| || |||| ||||| ||| ||||| | | | ||||| || Sbjct 2275840 AATGCCGGTACTCCTCAGTCCCAGCTGTCCTCTTGCTTCCTGGTCGACATGAAGGATGAC 2275899 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || |||| || || | ||| |||| || ||| ||||| || |||||| Sbjct 2275900 AGCATTGATGGTATCTATGACACCCTCAAGACCTGCGCCATGATCTCCAAAATGGCTGGC 2275959 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACAA 111909 |||||||| | || |||| || | || | | || || || || ||||| | Sbjct 2275960 GGTATCGGCCTCAACGTCCACCGCATCCGTGCTA-CTGGT-TCCTACATTGCCGGTACCA 2276017 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || ||| | ||| | | || |||||||| || || ||| ||| || | |||| Sbjct 2276018 ACGGAACATCCAACGGTCTGGTCCCCATGCTTCGGGTCTTCAACAACACGGCTAGATATG 2276077 Query 111970 TAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | |||| | ||| ||||| || | | || |||||||||||||||||| Sbjct 2276078 TTGACCAGGGTGGCAACAAGCGTCCT---GGCGCCTTTGCCATCTATCTTGAGCCATGGC 2276134 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 | || || | | |||||||| || |||||| ||||| || | ||||| | | || Sbjct 2276135 ATGCCGACGTATTCGAGTTCCTCGACTTGCGTAAGAACCACGGCAAGGAGGAAGTTC-GT 2276193 Query 112084 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 || || ||||| |||| || |||||||| |||||||| ||||||||| | || ||| || Sbjct 2276194 GCTCGTGATCTTTTCTTGGCCCTCTGGATCCCAGATCTGTTCATGAAGCGTGTCGAGAAG 2276253 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202 | ||| | ||| | || | || || | || || ||||| |||| | || Sbjct 2276254 AACGGCGACTGGACCCTGATGTGCCCCAATGAGTGCCCAGGTCTGGCCGACTGCTACGGC 2276313 Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGG 112260 ||||||||||| ||| | || ||||||||| || ||| ||| | || ||| Sbjct 2276314 GAGGAGTTTGAGGCCTTGTATGAGAAGTACGAGAGCGAGGGTC--GCGGCCGCAAGACCA 2276371 Query 112261 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 | | || | || | ||||| | |||||||| || | || || ||||| |||| || Sbjct 2276372 T-CAAGGCCCAGAAGCTGTGGTACTCTATTCTCGAGGCCCAGACTGAGACCGGTAACCCC 2276430 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379 | ||||| ||||| || ||| |||| ||||| || || ||||| | || ||| Sbjct 2276431 TTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTCGGAACAATC 2276490 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 |||||||||||||| || || ||| | || | | | || ||| ||| || Sbjct 2276491 CGAAGTTCCAACCTCTGCACCGAGATCATCGAGTACTGCGCCCCTGACGAGGTGGCCGTT 2276550 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--ATTTG 112497 || ||||| || || | ||||| || | || || | | | || | | | | | Sbjct 2276551 TGCAACCTGGCTTCTCTGGCTCTGCCATCCTTCGTTGA-CTACA-ACGAGGGCTGCTACG 2276608 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 ||| | || || || || || || | ||| || || |||| | | |||| Sbjct 2276609 ATTTCCAGAAGCTGCATGAGGTCACTCAGGTCGTCGTCCGCAATCTCAACAAAATCATTG 2276668 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 | || |||||||| || || || || || ||| | ||||| || |||| Sbjct 2276669 ACGTCAACCACTACCCCGTCCAGGAGGCCCGAAACAGCAACATGCGTCACCGACCCATTG 2276728 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTC----GCCACGCATTTGAT 112673 | | ||||| ||||||||||| |||| | ||||| | | | | | | || || Sbjct 2276729 GCGTGGGTGTTCAAGGTCTCGCTGATG----CTTTCTTGGCCCTGAGACTCCCCTTCGAG 2276784 Query 112674 TCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTT 112733 || ||| || || | || || || ||||| || || || |||||||| ||| Sbjct 2276785 TCACCCGAGGCTCGTGAGTTGAACAAGCAGATCTTTGAAACCATTTACCACGCCGC-CTT 2276843 Query 112734 GAGGCGAGTTCG---GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 112790 || || |||| ||| | || | | | || || || || | || |||| ||| Sbjct 2276844 GA--CGGCTTCGGTTGAGCTCGCCAAAGAGCAGGGCCCTTACGAGTCATTCAAGGGATCT 2276901 Query 112791 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA-AGCTTCACTA 112849 || ||||| | || | || || ||||| |||| |||| |||| ||| | || | Sbjct 2276902 CCTGCTTCCGAGGGCATCCTGCAGTTTGACATGT-GGAACGTGAAGCCATCGGATCTGTG 2276960 Query 112850 CGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGAT 112909 || ||||| | || || | |||||||| | ||| | || ||||| | || | Sbjct 2276961 GGAGTGGGAGGACCTTCGTGAGCAGGTCAAGGAGCACGGTATCCGCAACAGCTTGCTGGT 2277020 Query 112910 GGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 112969 || || ||||| |||||| ||| | ||||| | || || ||||||||||||||||| Sbjct 2277021 AGCTCCCATGCCCACAGCCAGTACCTCGCAAATTCTCGGCAACAATGAATGCTTTGAACC 2277080 Query 112970 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAA 113029 ||||| | ||||| || | |||| | | | || || ||||| | | |||||| Sbjct 2277081 TTACACTTCCAACATTTACCAGAGACGTGTCTTGGCTGGTGAGTTCCAGGTCGTCAACCC 2277140 Query 113030 GCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 113089 | | | | || || || || ||||||||||| | | |||||| ||| ||| Sbjct 2277141 GTGGTTGCTCAAGGATCTGGTCGACATGGGTCTCTGGTCGGATGCCATGAAGAATCGCAT 2277200 Query 113090 GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTT 113149 | | | ||| || ||||| || ||| |||| || | ||| || |||| | Sbjct 2277201 CATTGCTGAGAATGGCTCTATTCAGAACATTCCCAATATCCCTGCTGATATCAAGAGTCT 2277260 Query 113150 GTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGG 113209 ||| || || ||||| ||| | | | || | | ||||| || |||||||| Sbjct 2277261 CTACAAGACCGTCTGGGAGATCTCGCAGCGTCAAGTTGTGCAGATGGCTGCTGATCGTGG 2277320 Query 113210 TCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAA 113269 | |||||||| ||| |||| | || | |||| | ||| || ||| || Sbjct 2277321 TGCTTTCATTGACCAATCTCAATCCCTCAACATTCACATGAAGGATCCTACCATGGGTAA 2277380 Query 113270 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCT 113329 | || | |||||| | | |||||| |||||||| || || ||||| ||||| Sbjct 2277381 GATCACCAGCATGCACTTCACTGGCTGGAAGCTTGGTCTCAAGACCGGCATGTACTACCT 2277440 Query 113330 CCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCA 113364 || || |||| ||| || ||||| |||| Sbjct 2277441 GCGTACTCAGGCCGCTGCGGCACCCATTCAATTCA 2277475 >seq3 Length=5051094 Score = 113 bits (124), Expect = 6e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 102166 ||||| || || |||| ||||| || |||||||| || ||| | | | || | | Sbjct 937127 ACAGTCCCTTGCATTCGCAAGAAGGCCGATTGGGCCATCCGATGGATCCAGGATAAGGAC 937186 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 | | | || ||| |||| || | || || || ||| ||||||||||| ||| || Sbjct 937187 TCCT-CTTTCGCTCAGCGCCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTTTTCAGCGG 937245 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 | ||| | | || | |||||||||||||| || || ||||| ||||| |||||| Sbjct 937246 CGCATTCGCCTCAATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCCGGTCTGACCTTCTC 937305 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||||||| ||||||||||||||||| |||||| Sbjct 937306 CAACGAGCTCATCTCTCGTGACGAGGGCCTCCAC 937339 >seq9 Length=2573079 Score = 93.3 bits (102), Expect = 5e-14 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 ||| || ||||| |||||||||| |||||| || ||| | |||| | | | || | Sbjct 143751 GGCGTCGATCTCGTCAATGAAGATGATGCAGGGCGCATTCTTGCGACCCTCGGCGAACAA 143810 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAA 16181 || ||||| || || ||| || ||||||||||||||||| || | | | | || Sbjct 143811 GTCTCGTACTCGGGAGGGGCCAACGCCAACAAACATCTCCACGAACTCCGATCCACTGAC 143870 Query 16182 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241 | || ||| || ||| ||||| || || | || |||||| ||||||||||| Sbjct 143871 GCT--GAAGAAAGGCACACCGGATTCTCCGGCGGTAGCCTTGGCGAGGAGAGTCTTACCA 143928 Query 16242 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 || || || || || |||| |||||||| ||||||||||| || Sbjct 143929 GTTCCCGGGGGCCCAGCAAGGATAGCACCTCGAGGAATCTTGGCTCC 143975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741577516320